View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902_high_13 (Length: 392)

Name: NF8902_high_13
Description: NF8902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902_high_13
NF8902_high_13
[»] chr6 (6 HSPs)
chr6 (6-177)||(9338224-9338395)
chr6 (184-281)||(1800219-1800316)
chr6 (184-281)||(8635311-8635408)
chr6 (296-378)||(18269606-18269688)
chr6 (190-281)||(29489460-29489551)
chr6 (184-279)||(29396741-29396834)
[»] chr7 (7 HSPs)
chr7 (269-378)||(11354257-11354365)
chr7 (1-84)||(11354537-11354620)
chr7 (188-287)||(32027411-32027510)
chr7 (177-281)||(11354388-11354492)
chr7 (184-280)||(46401173-46401269)
chr7 (184-279)||(31846511-31846606)
chr7 (142-177)||(11354510-11354545)
[»] chr4 (8 HSPs)
chr4 (177-281)||(35259080-35259184)
chr4 (177-274)||(34441993-34442090)
chr4 (184-279)||(23391978-23392073)
chr4 (184-279)||(49705199-49705294)
chr4 (184-279)||(45621663-45621758)
chr4 (201-279)||(48511697-48511775)
chr4 (200-279)||(15666960-15667039)
chr4 (184-279)||(27512067-27512162)
[»] chr8 (6 HSPs)
chr8 (185-281)||(9540774-9540870)
chr8 (188-281)||(15255615-15255708)
chr8 (203-278)||(33237414-33237490)
chr8 (184-279)||(4884284-4884379)
chr8 (184-222)||(40616922-40616960)
chr8 (177-221)||(27115608-27115652)
[»] scaffold0196 (1 HSPs)
scaffold0196 (184-277)||(7916-8009)
[»] chr5 (3 HSPs)
chr5 (184-281)||(42545128-42545225)
chr5 (185-281)||(31506804-31506900)
chr5 (188-279)||(8466488-8466579)
[»] chr3 (9 HSPs)
chr3 (177-281)||(37486338-37486442)
chr3 (226-281)||(25638511-25638566)
chr3 (184-258)||(4156696-4156770)
chr3 (190-279)||(40291713-40291802)
chr3 (47-150)||(24506973-24507076)
chr3 (184-279)||(50327355-50327450)
chr3 (184-279)||(50874649-50874744)
chr3 (184-258)||(20252592-20252666)
chr3 (184-279)||(13843454-13843549)
[»] chr2 (4 HSPs)
chr2 (190-278)||(45369267-45369355)
chr2 (177-281)||(24133896-24134000)
chr2 (184-279)||(43178329-43178424)
chr2 (188-279)||(17562844-17562935)


Alignment Details
Target: chr6 (Bit Score: 104; Significance: 9e-52; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 6 - 177
Target Start/End: Complemental strand, 9338395 - 9338224
Alignment:
Q  6 taggttattttgatgatgttcaaatgactgatgggttttacttagcatgttgttcctttattagtttcgcttagattatgttaaagcacccagggaatct 105  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||| | ||| |    
T  9338395 taggttgttttgatgatgttcaaatgactggtgggttttacttagcattttattcctttattagtttagcttagattatgttaaagcacccaagtaatat 9338296  T
Q  106 gtgtctcttagtactgcttgatttcttgtggtctgattagcttatagcctaagtaaatttcattcataatgt 177  Q
    | ||||||||||||||  ||||| ||||||  ||| ||||||||||||| ||||||| ||||||||||||||    
T  9338295 gcgtctcttagtactgtgtgattccttgtgtcctggttagcttatagcccaagtaaaattcattcataatgt 9338224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 184 - 281
Target Start/End: Original strand, 1800219 - 1800316
Alignment:
Q  184 taaccgaaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaaccgaaccat 281  Q
    |||| ||| ||||| |||||||||||||||||| ||||| |  |||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  1800219 taactgaatcgaaccatatcaaaattaactgaaccatttcagtaatttttgaactgaaccattattttaataacagttaattaaccgaaccgaaccat 1800316  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 184 - 281
Target Start/End: Original strand, 8635311 - 8635408
Alignment:
Q  184 taaccgaaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaaccgaaccat 281  Q
    ||||| || ||||| ||||||||||||||| || ||||| ||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  8635311 taaccaaatcgaaccatatcaaaattaactaaaccatttcacagatttttgaactgaaccattattttgataacagttaattaatcgaaccgaaccat 8635408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 296 - 378
Target Start/End: Original strand, 18269606 - 18269688
Alignment:
Q  296 ctaactttgtctttcattcttatctgattgcaacttactgatacatttgataattttatgttctagtgatatacgttgttgat 378  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||| || || |||||||||||||||||||    
T  18269606 ctaactttgtctttcattctaatctgattgcaacttactaatacatttgatgattttctggtccagtgatatacgttgttgat 18269688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 281
Target Start/End: Complemental strand, 29489551 - 29489460
Alignment:
Q  190 aaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaaccgaaccat 281  Q
    ||||||||| |||||||||||| |||| ||||| || |||| | |||| |||| ||||||||||||||| || | ||||| ||| |||||||    
T  29489551 aaccgaactgtatcaaaattaattgaaccatttcactaattctcgaaccgaaccattattttgataacaattcactaaccaaactgaaccat 29489460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 279
Target Start/End: Original strand, 29396741 - 29396834
Alignment:
Q  184 taaccgaaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaaccgaacc 279  Q
    ||||||||||||||  ||||||||||||||||| ||||| || |||| |  ||| |||| || |||||||||||| |||   ||||||||||||||    
T  29396741 taaccgaaccgaaccgtatcaaaattaactgaaacatttaaccaattctcaaaccgaaccataattttgataacaatta--caaccgaaccgaacc 29396834  T

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Target: chr7 (Bit Score: 94; Significance: 9e-46; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 269 - 378
Target Start/End: Complemental strand, 11354365 - 11354257
Alignment:
Q  269 cgaaccgaaccataaccattaaatttactaactttgtctttcattcttatctgattgcaacttactgatacatttgataattttatgttctagtgatata 368  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  11354365 cgaaccgaaccataaccattaaatt-actaactttgtctttcattcttatctgattgcaacttactgatgcatttgataattttatgttccagtgatata 11354267  T
Q  369 cgttgttgat 378  Q
    ||||||||||    
T  11354266 cgttgttgat 11354257  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 11354620 - 11354537
Alignment:
Q  1 tgacataggttattttgatgatgttcaaatgactgatgggttttacttagcatgttgttcctttattagtttcgcttagattat 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||    
T  11354620 tgacataggttattttgatgatgttcaaatgactgatgggttttacttagcatgttattcctttattagttgggcttagattat 11354537  T

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Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 188 - 287
Target Start/End: Original strand, 32027411 - 32027510
Alignment:
Q  188 cgaaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaaccgaaccataaccat 287  Q
    |||||||||| ||||||||||||||||||  |||| || |||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||    
T  32027411 cgaaccgaaccatatcaaaattaactgaacaatttcacgaatttttgaactgaaccattataatgataacagttaattaaccgaaccgaaccataaccat 32027510  T

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Target: chr7; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 177 - 281
Target Start/End: Complemental strand, 11354492 - 11354388
Alignment:
Q  177 taaccaataaccgaaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaaccga 276  Q
    |||||||||| |||||||||| ||||| |||||||||||| ||||| ||||||||||||  || || |||||||||| ||||||||||||||||||| ||    
T  11354492 taaccaataatcgaaccgaaccatatctaaattaactgaaccatttcacaaatttttgagttggaccattattttgacaacagttaattaaccgaacaga 11354393  T
Q  277 accat 281  Q
    |||||    
T  11354392 accat 11354388  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 184 - 280
Target Start/End: Complemental strand, 46401269 - 46401173
Alignment:
Q  184 taaccgaaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaaccgaacca 280  Q
    |||||||||||||| |||||||||||||||||| ||||| || ||||   |||| |||| ||||||||||||||| || | || |||||||||||||    
T  46401269 taaccgaaccgaaccatatcaaaattaactgaaccatttaaccaattcccgaaccgaaccattattttgataacaattcactatccgaaccgaacca 46401173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 184 - 279
Target Start/End: Complemental strand, 31846606 - 31846511
Alignment:
Q  184 taaccgaaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaaccgaacc 279  Q
    |||||||||||||| |||||||||||||||||| ||||| || |||| | ||||  ||| ||||||||||||||| || | ||||||||| |||||    
T  31846606 taaccgaaccgaaccatatcaaaattaactgaaccatttaaccaattctcgaacgaaaccattattttgataacaattcactaaccgaactgaacc 31846511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 177
Target Start/End: Complemental strand, 11354545 - 11354510
Alignment:
Q  142 ttagcttatagcctaagtaaatttcattcataatgt 177  Q
    |||| |||||||||||||||||||||||||||||||    
T  11354545 ttagattatagcctaagtaaatttcattcataatgt 11354510  T

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Target: chr4 (Bit Score: 89; Significance: 8e-43; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 177 - 281
Target Start/End: Complemental strand, 35259184 - 35259080
Alignment:
Q  177 taaccaataaccgaaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaaccga 276  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35259184 taaccaataaccgaaccgaaccatatcaaaattaactgaaccatttcacaaatttttgaactgaaccattattttgataacagttaattaaccgaaccga 35259085  T
Q  277 accat 281  Q
    |||||    
T  35259084 accat 35259080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 177 - 274
Target Start/End: Complemental strand, 34442090 - 34441993
Alignment:
Q  177 taaccaataaccgaaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaacc 274  Q
    |||||||||| |||||||||| ||||||||||||||||||  |||| || |||||||| ||||||| ||||||||||||||| |||||||||||||||    
T  34442090 taaccaataatcgaaccgaaccatatcaaaattaactgaactatttcactaatttttggactgaaccattattttgataacacttaattaaccgaacc 34441993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 279
Target Start/End: Original strand, 23391978 - 23392073
Alignment:
Q  184 taaccgaaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaaccgaacc 279  Q
    ||||||||||||||  ||||| ||||||||||| ||||| || |||| |||||| |||| ||||||||||||||| || ||||||||||| |||||    
T  23391978 taaccgaaccgaaccgtatcagaattaactgaaccatttaaccaattcttgaaccgaaccattattttgataacaattcattaaccgaactgaacc 23392073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 279
Target Start/End: Original strand, 49705199 - 49705294
Alignment:
Q  184 taaccgaaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaaccgaacc 279  Q
    ||||||||||||||  ||||| ||||||||||| ||||| || |||| |||||| |||| ||||||||||||||| || ||||||||||| |||||    
T  49705199 taaccgaaccgaaccgtatcagaattaactgaaccatttaaccaattcttgaaccgaaccattattttgataacaattcattaaccgaactgaacc 49705294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 279
Target Start/End: Complemental strand, 45621758 - 45621663
Alignment:
Q  184 taaccgaaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaaccgaacc 279  Q
    ||||| |||||||| |||||||||||||| ||| ||||| || |||| | |||| |||| ||||||||||||||| || | | ||||||| |||||    
T  45621758 taaccaaaccgaaccatatcaaaattaaccgaaccatttaaccaattctcgaaccgaaccattattttgataacaattcactgaccgaactgaacc 45621663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 48511697 - 48511775
Alignment:
Q  201 atcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaaccgaacc 279  Q
    |||||||||||||||| ||||| |  ||||||||||| | || |||||||||||||| ||| | ||||||||| |||||    
T  48511697 atcaaaattaactgaaccatttcatcaatttttgaaccgcaccattattttgataacggttcactaaccgaactgaacc 48511775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 279
Target Start/End: Original strand, 15666960 - 15667039
Alignment:
Q  200 tatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaaccgaacc 279  Q
    |||||||||||| ||||  |||| || |||||| |||  |||| ||||||||||||||| || | |||||||||||||||    
T  15666960 tatcaaaattaattgaactatttaaccaattttcgaatcgaactattattttgataacaattcactaaccgaaccgaacc 15667039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 279
Target Start/End: Complemental strand, 27512162 - 27512067
Alignment:
Q  184 taaccgaaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaaccgaacc 279  Q
    ||||||||| |||||||||||||||||| |||| |||||   || || | ||||||||| |||||||||| | || || | ||||||||| |||||    
T  27512162 taaccgaactgaactatatcaaaattaattgaaccatttcgaaagttctcgaactgaaccattattttgacagcaattcactaaccgaactgaacc 27512067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 185 - 281
Target Start/End: Complemental strand, 9540870 - 9540774
Alignment:
Q  185 aaccgaaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaaccgaaccat 281  Q
    ||||||| ||||| |||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9540870 aaccgaatcgaaccatatcaaaattaactgaaccatttcacaaatttttgaactgaaccattattttgataacagttaattaaccgaaccgaaccat 9540774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 188 - 281
Target Start/End: Complemental strand, 15255708 - 15255615
Alignment:
Q  188 cgaaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaaccgaaccat 281  Q
    ||||||||||||||||||||||||||||| ||||| | ||||||||||||||||| ||||||||  ||| |||||||||||| |||||||||||    
T  15255708 cgaaccgaactatatcaaaattaactgaaccatttcataaatttttgaactgaaccattattttcttaatagttaattaaccaaaccgaaccat 15255615  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 203 - 278
Target Start/End: Original strand, 33237414 - 33237490
Alignment:
Q  203 caaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaacc-gaaccgaac 278  Q
    |||||||||||||| ||||| || |||||||||||||||  |||||||||||||||||||||||||| |||||||||    
T  33237414 caaaattaactgaaccatttcactaatttttgaactgaatcattattttgataacagttaattaaccagaaccgaac 33237490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 279
Target Start/End: Original strand, 4884284 - 4884379
Alignment:
Q  184 taaccgaaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaaccgaacc 279  Q
    ||||||||||||||  ||||| ||||||||||| ||||| || |||| |||||| |||| ||||||||||||||| || ||||||||||| |||||    
T  4884284 taaccgaaccgaaccgtatcagaattaactgaaccatttaaccaattcttgaaccgaaccattattttgataacaattcattaaccgaactgaacc 4884379  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 40616960 - 40616922
Alignment:
Q  184 taaccgaaccgaactatatcaaaattaactgaatcattt 222  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  40616960 taaccgaaccgaaccatatcaaaattaactgaatcattt 40616922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 27115652 - 27115608
Alignment:
Q  177 taaccaataaccgaaccgaactatatcaaaattaactgaatcatt 221  Q
    |||||||||||||||  |||| |||||||||||||||||| ||||    
T  27115652 taaccaataaccgaattgaaccatatcaaaattaactgaaccatt 27115608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 184 - 277
Target Start/End: Complemental strand, 8009 - 7916
Alignment:
Q  184 taaccgaaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaaccgaa 277  Q
    |||||||||||||| |||||||||||||||||| ||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  8009 taaccgaaccgaaccatatcaaaattaactgaaccatttcacaaatttatgaactgaactattattttgataacagttaattaaccgaaccgaa 7916  T

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Target: chr5 (Bit Score: 74; Significance: 8e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 184 - 281
Target Start/End: Original strand, 42545128 - 42545225
Alignment:
Q  184 taaccgaaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaaccgaaccat 281  Q
    ||||| |||||||| |||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42545128 taacctaaccgaaccatatcaaaattaactgaaccatttcacagatttttgaactgaaccattattttgataacagttaattaaccgaaccgaaccat 42545225  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 281
Target Start/End: Original strand, 31506804 - 31506900
Alignment:
Q  185 aaccgaaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaaccgaaccat 281  Q
    |||||||||||||  ||||||||||||||||| ||||| || |||| | |||| |||| |||||||||| ||||||| | ||||||||| |||||||    
T  31506804 aaccgaaccgaaccgtatcaaaattaactgaaccatttaaccaattctcgaaccgaaccattattttgaaaacagttcactaaccgaactgaaccat 31506900  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 8466579 - 8466488
Alignment:
Q  188 cgaaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaaccgaacc 279  Q
    ||||||||||| ||||||||||||||| | ||||| || |||| |||||  |||| |||||||| ||||||||| | ||||||||| |||||    
T  8466579 cgaaccgaactgtatcaaaattaactggaccatttaaccaattcttgaatcgaaccattattttaataacagttcactaaccgaactgaacc 8466488  T

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Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 177 - 281
Target Start/End: Complemental strand, 37486442 - 37486338
Alignment:
Q  177 taaccaataaccgaaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaaccga 276  Q
    |||||| |||| ||||||||| |||||||||||||||||| ||||| |||| ||| |||||||||| |||||||||||| ||||||||||||||||||||    
T  37486442 taaccagtaactgaaccgaaccatatcaaaattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccga 37486343  T
Q  277 accat 281  Q
    |||||    
T  37486342 accat 37486338  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 226 - 281
Target Start/End: Original strand, 25638511 - 25638566
Alignment:
Q  226 aaatttttgaactgaacgattattttgataacagttaattaaccgaaccgaaccat 281  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  25638511 aaatttttgaactgaaccattatttttataacagttaattaaccgaaccgaaccat 25638566  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 4156770 - 4156696
Alignment:
Q  184 taaccgaaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataaca 258  Q
    ||||||||||||||| ||||||| ||||||||||||||| || |||| | |||| |||| |||||||||||||||    
T  4156770 taaccgaaccgaactgtatcaaagttaactgaatcatttaactaattctcgaacggaaccattattttgataaca 4156696  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 190 - 279
Target Start/End: Original strand, 40291713 - 40291802
Alignment:
Q  190 aaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaaccgaacc 279  Q
    ||||||||  ||||| ||||||||||| ||||| || |||| |||||| |||| ||||||||||||||| || ||||||||||| |||||    
T  40291713 aaccgaaccgtatcagaattaactgaaccatttaaccaattcttgaaccgaaccattattttgataacaattcattaaccgaactgaacc 40291802  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 24506973 - 24507076
Alignment:
Q  47 ttagcatgttgttcctttattagtttcgcttagattatgttaaagcacccagggaatctgtgtctcttagtactgcttgatttcttgtggtctgattagc 146  Q
    ||||||||||||||||||  |||||| |||||||||||||||||||||||| | ||  ||||| |||| ||| ||  ||||| |||||| |||  |||||    
T  24506973 ttagcatgttgttcctttgatagtttagcttagattatgttaaagcacccaagcaacatgtgtatctttgtattgtgtgattccttgtgttctagttagc 24507072  T
Q  147 ttat 150  Q
    ||||    
T  24507073 ttat 24507076  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 279
Target Start/End: Original strand, 50327355 - 50327450
Alignment:
Q  184 taaccgaaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaaccgaacc 279  Q
    ||||||||||||||  |||||||||||| |||| ||||| || |||| | |||| |||| ||||||||||||||| || | ||||||||| |||||    
T  50327355 taaccgaaccgaaccgtatcaaaattaattgaaccatttaaccaattctcgaaccgaaccattattttgataacaattcactaaccgaactgaacc 50327450  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 279
Target Start/End: Original strand, 50874649 - 50874744
Alignment:
Q  184 taaccgaaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaaccgaacc 279  Q
    ||||| ||||||||  ||||||||||||||||| ||||| ||||||||| ||||  ||| ||||||||||||||| || | |||| |||| |||||    
T  50874649 taaccaaaccgaaccgtatcaaaattaactgaaccatttaacaaattttcgaaccaaaccattattttgataacaattcactaacggaactgaacc 50874744  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 20252592 - 20252666
Alignment:
Q  184 taaccgaaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataaca 258  Q
    |||||||||||||| ||||||||||||||||||  |||| || |||| | |||| |||| |||||||||||||||    
T  20252592 taaccgaaccgaaccatatcaaaattaactgaacaatttaaccaattctcgaaccgaacaattattttgataaca 20252666  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 279
Target Start/End: Complemental strand, 13843549 - 13843454
Alignment:
Q  184 taaccgaaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaaccgaacc 279  Q
    ||||||||| |||| |||||||||||||||||| ||||| || | || | |||| |||| ||||||| ||||||| || | ||||||||| |||||    
T  13843549 taaccgaactgaaccatatcaaaattaactgaaccatttaaccatttctcgaaccgaaccattatttggataacaattcactaaccgaactgaacc 13843454  T

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Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 190 - 278
Target Start/End: Complemental strand, 45369355 - 45369267
Alignment:
Q  190 aaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaaccgaac 278  Q
    |||| ||| |||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  45369355 aaccaaaccatatcaaaattaactgaaccatttcacaaatttttgaactgaaccattattttgataacagttaattaaccgaaccgaac 45369267  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 177 - 281
Target Start/End: Complemental strand, 24134000 - 24133896
Alignment:
Q  177 taaccaataaccgaaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaaccga 276  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||| ||||   ||||||  ||||||||||| ||| ||    
T  24134000 taaccaataaccgaaccgaaccatatcaaaattaactgaaccatttcacaaatttttgaactgaaccattacaatgataatggttaattaaccaaacaga 24133901  T
Q  277 accat 281  Q
    |||||    
T  24133900 accat 24133896  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 279
Target Start/End: Complemental strand, 43178424 - 43178329
Alignment:
Q  184 taaccgaaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaaccgaacc 279  Q
    ||||||||||||||  ||||| ||||||||||| ||||| || |||| |||||| |||| ||||||||||||||| || ||||||||||| |||||    
T  43178424 taaccgaaccgaaccgtatcagaattaactgaaccatttaaccaattcttgaaccgaaccattattttgataacaattcattaaccgaactgaacc 43178329  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 279
Target Start/End: Original strand, 17562844 - 17562935
Alignment:
Q  188 cgaaccgaactatatcaaaattaactgaatcattttacaaatttttgaactgaacgattattttgataacagttaattaaccgaaccgaacc 279  Q
    ||||||||||  ||||||||||||||||| ||||| || |||| | |||| |||| ||||||||||||||| || | ||||||||| |||||    
T  17562844 cgaaccgaaccgtatcaaaattaactgaaccatttaaccaattctcgaaccgaaccattattttgataacaattcactaaccgaactgaacc 17562935  T

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