View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902_high_20 (Length: 202)

Name: NF8902_high_20
Description: NF8902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902_high_20
NF8902_high_20
[»] chr5 (4 HSPs)
chr5 (5-118)||(37217231-37217344)
chr5 (116-202)||(37217551-37217637)
chr5 (144-202)||(37223282-37223340)
chr5 (151-202)||(37232233-37232284)
[»] chr1 (2 HSPs)
chr1 (72-118)||(13430241-13430287)
chr1 (81-113)||(40091469-40091501)
[»] chr8 (1 HSPs)
chr8 (80-113)||(13572885-13572918)
[»] chr6 (3 HSPs)
chr6 (80-113)||(26882397-26882430)
chr6 (81-113)||(13729279-13729311)
chr6 (81-113)||(21544475-21544507)
[»] chr4 (1 HSPs)
chr4 (79-112)||(18165234-18165267)
[»] chr3 (2 HSPs)
chr3 (80-113)||(26770265-26770298)
chr3 (81-113)||(7226067-7226099)
[»] scaffold0022 (1 HSPs)
scaffold0022 (81-113)||(63030-63062)
[»] scaffold0010 (1 HSPs)
scaffold0010 (80-112)||(145234-145266)
[»] chr7 (2 HSPs)
chr7 (72-116)||(21443855-21443899)
chr7 (74-118)||(29018057-29018101)


Alignment Details
Target: chr5 (Bit Score: 114; Significance: 5e-58; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 37217231 - 37217344
Alignment:
Q  5 gttcatcactggaacctggtaaattttcaatcatatttaaaacatgttttgttataccattttctttataaaagtaagggttaatagtgctttaccaccc 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37217231 gttcatcactggaacctggtaaattttcaatcatatttaaaacatgttttgttataccattttctttataaaagtaagggttaatagtgctttaccaccc 37217330  T
Q  105 tgtaatataagtta 118  Q
    ||||||||||||||    
T  37217331 tgtaatataagtta 37217344  T

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Target: chr5; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 116 - 202
Target Start/End: Original strand, 37217551 - 37217637
Alignment:
Q  116 ttacagggggtaaaacactattaaccaaaaaagtaattgttgcattattaactttcttcagtaactttggtgtttatactatattct 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37217551 ttacagggggtaaaacactattaaccaaaaaagtaattgttgcattattaactttcttcagtaactttggtgtttatactatattct 37217637  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 37223282 - 37223340
Alignment:
Q  144 aaaagtaattgttgcattattaactttcttcagtaactttggtgtttatactatattct 202  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||    
T  37223282 aaaagtaattgttgctttattaactttcttcagtaactttgctgtttatattatattct 37223340  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 151 - 202
Target Start/End: Original strand, 37232233 - 37232284
Alignment:
Q  151 attgttgcattattaactttcttcagtaactttggtgtttatactatattct 202  Q
    |||||| | ||||||||||||||||||||||||| |||||||||||||||||    
T  37232233 attgtttctttattaactttcttcagtaactttgttgtttatactatattct 37232284  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 13430241 - 13430287
Alignment:
Q  72 ataaaagtaagggttaatagtgctttaccaccctgtaatataagtta 118  Q
    |||||||||||||||||||||||||| |  |||||||||||| ||||    
T  13430241 ataaaagtaagggttaatagtgcttttcacccctgtaatatatgtta 13430287  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 40091469 - 40091501
Alignment:
Q  81 agggttaatagtgctttaccaccctgtaatata 113  Q
    |||||||||||||||||||| ||||||||||||    
T  40091469 agggttaatagtgctttacccccctgtaatata 40091501  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 13572918 - 13572885
Alignment:
Q  80 aagggttaatagtgctttaccaccctgtaatata 113  Q
    ||||||||||||||||||||| ||||||||||||    
T  13572918 aagggttaatagtgctttacccccctgtaatata 13572885  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 26882430 - 26882397
Alignment:
Q  80 aagggttaatagtgctttaccaccctgtaatata 113  Q
    ||||||||||||||||||||| ||||||||||||    
T  26882430 aagggttaatagtgctttacccccctgtaatata 26882397  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 13729311 - 13729279
Alignment:
Q  81 agggttaatagtgctttaccaccctgtaatata 113  Q
    |||||||||||||||||||| ||||||||||||    
T  13729311 agggttaatagtgctttacccccctgtaatata 13729279  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 21544507 - 21544475
Alignment:
Q  81 agggttaatagtgctttaccaccctgtaatata 113  Q
    |||||||||||||||||||| ||||||||||||    
T  21544507 agggttaatagtgctttacccccctgtaatata 21544475  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 112
Target Start/End: Complemental strand, 18165267 - 18165234
Alignment:
Q  79 taagggttaatagtgctttaccaccctgtaatat 112  Q
    |||||||||||||||||||||| |||||||||||    
T  18165267 taagggttaatagtgctttacccccctgtaatat 18165234  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 26770298 - 26770265
Alignment:
Q  80 aagggttaatagtgctttaccaccctgtaatata 113  Q
    ||||||||||||||||||||| ||||||||||||    
T  26770298 aagggttaatagtgctttacccccctgtaatata 26770265  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 7226067 - 7226099
Alignment:
Q  81 agggttaatagtgctttaccaccctgtaatata 113  Q
    |||||||||||||||||||| ||||||||||||    
T  7226067 agggttaatagtgctttacccccctgtaatata 7226099  T

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Target: scaffold0022 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 63030 - 63062
Alignment:
Q  81 agggttaatagtgctttaccaccctgtaatata 113  Q
    |||||||||||||||||||| ||||||||||||    
T  63030 agggttaatagtgctttacccccctgtaatata 63062  T

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Target: scaffold0010 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 145266 - 145234
Alignment:
Q  80 aagggttaatagtgctttaccaccctgtaatat 112  Q
    ||||||||| |||||||||||||||||||||||    
T  145266 aagggttaacagtgctttaccaccctgtaatat 145234  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 21443855 - 21443899
Alignment:
Q  72 ataaaagtaagggttaatagtgctttaccaccctgtaatataagt 116  Q
    |||||| ||||||||||||||| |||| | |||||||||||||||    
T  21443855 ataaaaataagggttaatagtgttttatccccctgtaatataagt 21443899  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 29018101 - 29018057
Alignment:
Q  74 aaaagtaagggttaatagtgctttaccaccctgtaatataagtta 118  Q
    |||||||||||||||| ||| |||||| |||||||||||| ||||    
T  29018101 aaaagtaagggttaatggtgttttacccccctgtaatataggtta 29018057  T

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