View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8902_high_3 (Length: 551)
Name: NF8902_high_3
Description: NF8902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 36 - 486
Target Start/End: Original strand, 6547890 - 6548340
Alignment:
| Q |
36 |
agtcctgtaaatgcagctcaattaacaactctatagacattaaaatgtaaggtttgagtttgaacatcagattctccacttctcagcatttacagtgtgt |
135 |
Q |
| |
|
|||||| ||||||||||||| ||| || ||||||||||||||||||||| | |||||||| ||||||||||||||| ||||||||||| ||| ||| ||| |
|
|
| T |
6547890 |
agtcctataaatgcagctcagttagcagctctatagacattaaaatgtaggatttgagttcgaacatcagattctctacttctcagcacttatagtatgt |
6547989 |
T |
|
| Q |
136 |
gaatctagttactagactattaaaagaagaaaaaacctttgatggaatcatttaaagcaagtaaacattgatacaaaattcatctagtaatctccctatg |
235 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6547990 |
gaatctagttactagactattagaataagaaaaaacctttgatggaatcatttaaagcaagtaaacattgatacaaaattcatctagtaatctccctatg |
6548089 |
T |
|
| Q |
236 |
tcaaatgtgatcttaattgtatgtttaaatagtttaatcacattttagatgaaggtttcatatttggattagaatcatattcagtgattaacatttaaac |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6548090 |
tcaaatgtgatcttaattgtatgtttaaatagtttaatcacattttagatgaaggtttcatatttggattagaatcatattcagtgattaacatttaaac |
6548189 |
T |
|
| Q |
336 |
taacttgtctgtctggtggggcactcaaagtgttcgatgacagccagaaatgtccaaagcttggtgggtaagacatcggttttatataaatacaattttt |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6548190 |
taacttgtctgtctggtggggcactcaaagtgttcgatgacagccagaaatgtccaaagcttggtgggtaagacatcggttttatataaatacaattttt |
6548289 |
T |
|
| Q |
436 |
taaagataagatcataagagcaatctaatggaagcttgaacttaagcttca |
486 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6548290 |
taaagataagatcataagagcaatctaatggaagcttgaacttaagcttca |
6548340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University