View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902_high_4 (Length: 505)
Name: NF8902_high_4
Description: NF8902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 168 - 504
Target Start/End: Complemental strand, 26691175 - 26690839
Alignment:
| Q |
168 |
tcaaaaattatgtccatgactttgaattgaattgagaaagataaacatgaaaactaataaccatcaaagatggctcttagtttgtggatatcatcaagaa |
267 |
Q |
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| T |
26691175 |
tcaagaattatgtccatgactttgaattgaattgagaaagataaacatgaaaactaataaccatcaaagatggctcttagtttgtgcatatcatcaagaa |
26691076 |
T |
|
| Q |
268 |
tcatgttcatgagtttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacacttcaaagcaaccattgtgaaagtct |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||| |
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| T |
26691075 |
tcatgttcatgagtttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacactttagtgcaaccattgtcaaagtct |
26690976 |
T |
|
| Q |
368 |
ccaatttaaccatgtcataatttgatcccaatgtagggtctactatttgttccaccaaagatttcatttctaataatttccttcttttctctctcaccca |
467 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26690975 |
ccaatttaaccatgtcataatttgatcccaatgtagggtctactatttgttccaccaaagatttcatttctaataatttccttcttttctctctcaccca |
26690876 |
T |
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| Q |
468 |
tgttaccaaactctcattatgagtcttttctccatct |
504 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
26690875 |
tgttaccaaactctcattatgagtcttttctccatct |
26690839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 168 - 504
Target Start/End: Complemental strand, 26732486 - 26732150
Alignment:
| Q |
168 |
tcaaaaattatgtccatgactttgaattgaattgagaaagataaacatgaaaactaataaccatcaaagatggctcttagtttgtggatatcatcaagaa |
267 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26732486 |
tcaagaattatgtccatgactttgaattgaattgagaaagataaacatgaaaactaataaccatcaaagatggctcttagtttgtgcatatcatcaagaa |
26732387 |
T |
|
| Q |
268 |
tcatgttcatgagtttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacacttcaaagcaaccattgtgaaagtct |
367 |
Q |
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| T |
26732386 |
tcatgttcatgagtttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacactttagagcaaccattgtcaaagtct |
26732287 |
T |
|
| Q |
368 |
ccaatttaaccatgtcataatttgatcccaatgtagggtctactatttgttccaccaaagatttcatttctaataatttccttcttttctctctcaccca |
467 |
Q |
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| T |
26732286 |
ccgatttaaccatgtcataatttgatcccaatgtagggtctactatttgttcaaccaaagatttcatttctaataatttccttcttttctctctcaccca |
26732187 |
T |
|
| Q |
468 |
tgttaccaaactctcattatgagtcttttctccatct |
504 |
Q |
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| T |
26732186 |
tgttaccaaactctcattatgagtcttttctccatct |
26732150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 180 - 500
Target Start/End: Complemental strand, 26695324 - 26695004
Alignment:
| Q |
180 |
tccatgactttgaattgaattgagaaagataaacatgaaaactaataaccatcaaagatggctcttagtttgtggatatcatcaagaatcatgttcatga |
279 |
Q |
| |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
26695324 |
tccatgactttgaattgaattaaggaagataaacatgaaaactaataaccatcaaagaaggctcttagtttgtgcatatcatgaagaatcatgttcatga |
26695225 |
T |
|
| Q |
280 |
gtttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacacttcaaagcaaccattgtgaaagtctccaatttaacca |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||| |
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| T |
26695224 |
gtttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacactttagagcaaccattgtcaaagtctccaatttaacca |
26695125 |
T |
|
| Q |
380 |
tgtcataatttgatcccaatgtagggtctactatttgttccaccaaagatttcatttctaataatttccttcttttctctctcacccatgttaccaaact |
479 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
26695124 |
tgtcataatttgatcccaatgtagggtctactatttgttccaccaaagatttcatttctgataaattccttcttttctctctcacccatgttaccaaact |
26695025 |
T |
|
| Q |
480 |
ctcattatgagtcttttctcc |
500 |
Q |
| |
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||||||||||||||||||||| |
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| T |
26695024 |
ctcattatgagtcttttctcc |
26695004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 26732729 - 26732554
Alignment:
| Q |
1 |
gagtaattttctagttcttggtctttactgctccatgacttgtcttggtcaataaatctttaatatttgaaggaattccatctttactgttacatttact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26732729 |
gagtaattttctagttcttggtctttactgctccatgacttgtcttggtcaataaatctttaatatttgaaggaattccatctttactgttacatttact |
26732630 |
T |
|
| Q |
101 |
caactattttttggttgcaaactaaactacaaaagaaaatgacctatataaatagagcagtatgacttcaaaaatt |
176 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26732629 |
caactattttttggttgcaaactaaactgcaaaagaaaatgacctatataaatagagcagtatgacttcaaaaatt |
26732554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 261 - 488
Target Start/End: Original strand, 26674996 - 26675223
Alignment:
| Q |
261 |
tcaagaatcatgttcatgagtttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacacttcaaagcaaccattgtg |
360 |
Q |
| |
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|||||||||||||| |||| |||| ||| | |||||||||| ||||||| | ||||| | |||||||||| ||| ||||| | |||||| |||| || |
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| T |
26674996 |
tcaagaatcatgttgatgactttggagcctctcaacaacttgactcatggtgggtctaacatctttctctttctctacacaatccaaagccaccactgcc |
26675095 |
T |
|
| Q |
361 |
aaagtctccaatttaaccatgtcataatttgatcccaatgtagggtctactatttgttccaccaaagatttcatttctaataatttccttcttttctctc |
460 |
Q |
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|| |||| ||||| ||| |||||||||||| ||||||||| |||||| ||||||||||| | | || || || |||| || |||||||||||||||| |
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| T |
26675096 |
aaggtcttcaattgaacaatgtcataatttaatcccaatgcagggtcaactatttgttcaatccaacatcccacttctgattctttccttcttttctctt |
26675195 |
T |
|
| Q |
461 |
tcacccatgttaccaaactctcattatg |
488 |
Q |
| |
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| | ||||||||| || ||||||||||| |
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| T |
26675196 |
taatccatgttactaacctctcattatg |
26675223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 97 - 176
Target Start/End: Complemental strand, 26691317 - 26691243
Alignment:
| Q |
97 |
tactcaactattttttggttgcaaactaaactacaaaagaaaatgacctatataaatagagcagtatgacttcaaaaatt |
176 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26691317 |
tactcaactattttttggttgcaaacta-----caaaagaaaatgacctatataaatagagcagtatgacttaaaaaatt |
26691243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 26696758 - 26696699
Alignment:
| Q |
22 |
tctttactgctccatgacttgtcttggtcaataaatctttaatatttgaaggaattccat |
81 |
Q |
| |
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||||||||| ||||||||||| ||||||||| || ||||||||||||| ||||||||||| |
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|
| T |
26696758 |
tctttactgatccatgacttggcttggtcaacaagtctttaatatttgtaggaattccat |
26696699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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