View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902_low_10 (Length: 517)
Name: NF8902_low_10
Description: NF8902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902_low_10 |
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| [»] scaffold0444 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 502
Target Start/End: Original strand, 31981059 - 31981533
Alignment:
| Q |
19 |
atttgagcacgagttggttagcaattgcctcatgtttgttctatctgtggtgttagaatcctcgggattgtttagctaggtaggagggagggtggctggc |
118 |
Q |
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| T |
31981059 |
atttgagcatgagttggttagcaattgcctcatgtttgttctatgtgtggtgttagaatcctcgggattgtttagctaggtaggagggagggtggctggc |
31981158 |
T |
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| Q |
119 |
tgactgttggcgcttacgatagtannnnnnncgggtgctggtatgatgtaacatagttgctgccctgttcacagctgcagatgcctttacagcttttggg |
218 |
Q |
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| T |
31981159 |
tgactattggcacttacgatagt--ttttttcgggtgctgttatgatgtaac-----tgctgccctgttcacagctgcagatgcctttactgcttttggg |
31981251 |
T |
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| Q |
219 |
tggnnnnnnnnnnnngtctttgctagctgtctgttgttgttgttattcaggtggtttagctttctatgtttagcttaaaagattgcttgtgggttaatga |
318 |
Q |
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| T |
31981252 |
tggttttttt-----gtctttgctagctgtctgttgttcttgttattcaggtggtttagctttctatgtatagcttaaaagactgcttgtgggttaatga |
31981346 |
T |
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| Q |
319 |
aatgaaagacaacctcat---atccaagtacatgttctcatgcaaaattttatttgttttttatcgtctataattgtttttctcttcaacataattaaga |
415 |
Q |
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| T |
31981347 |
aagtaaagacaacctcatcataaccaagtacatgttctcatgcaaaaatttatttgttttttatcgtctataattgtttttctcttcaacataattaaga |
31981446 |
T |
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| Q |
416 |
aacttattgttataatgtatagactctgtaaagtgattgctaattacatgattctgaaaccagttgtaacaaccaccttgttgatgt |
502 |
Q |
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| T |
31981447 |
aacttattgttataacgtatagactctgtagagtgattgcgaattacatgattctgaaaccagttgtaacaagcaccttgttgatgt |
31981533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 339 - 499
Target Start/End: Complemental strand, 44419876 - 44419725
Alignment:
| Q |
339 |
ccaagtacatgttctcatgcaaaattttatttgttttttatcgtctataattgtttttctcttcaacataattaagaaacttattgttataatgtataga |
438 |
Q |
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| T |
44419876 |
ccaagcacatgttatgatgcaaaaatttatttgtttcttatcgtctataattgtttctctcttcaacataattaagaaacttattgttataccgtatag- |
44419778 |
T |
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| Q |
439 |
ctctgtaaagtgattgctaattacatgattctgaaaccagttgtaacaaccaccttgttga |
499 |
Q |
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| T |
44419777 |
--------agtgattgctaattacatgactctgaaatcagttgaaacaagcaccttgttga |
44419725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 339 - 423
Target Start/End: Complemental strand, 44439357 - 44439273
Alignment:
| Q |
339 |
ccaagtacatgttctcatgcaaaattttatttgttttttatcgtctataattgtttttctcttcaacataattaagaaacttatt |
423 |
Q |
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| T |
44439357 |
ccaagcacatgttctgatgcaaaaatttgtttgtttcctattgtctataattgtttttatcttcaacataattaagaaacttatt |
44439273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 339 - 438
Target Start/End: Original strand, 9239477 - 9239576
Alignment:
| Q |
339 |
ccaagtacatgttctcatgcaaaattttatttgttttttatcgtctataattgtttttctcttcaacataattaagaaacttattgttataatgtataga |
438 |
Q |
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| T |
9239477 |
ccaagcacatgttatgatgcaaaaatttatttgtttcttatcgtctataattgtttctctcttcaacataattaagaaacttattgttataccgtataga |
9239576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0444 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0444
Description:
Target: scaffold0444; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 339 - 423
Target Start/End: Complemental strand, 4169 - 4085
Alignment:
| Q |
339 |
ccaagtacatgttctcatgcaaaattttatttgttttttatcgtctataattgtttttctcttcaacataattaagaaacttatt |
423 |
Q |
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| T |
4169 |
ccaagcacatgttctgatgcaaaaatttgtttgtttcctattgtctataattgtttttatcttcaacataattaagaaacttatt |
4085 |
T |
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