View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902_low_13 (Length: 486)
Name: NF8902_low_13
Description: NF8902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 23 - 472
Target Start/End: Original strand, 7095389 - 7095838
Alignment:
| Q |
23 |
gggttgcccgtgatatgggaccacaacaactcacaagatccaaatctaatccacgggtttctttttaggtcactaatcaatccttcttctctgtgttttt |
122 |
Q |
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| T |
7095389 |
gggttgcccgtgatatgggaccacaacaattcacaagatccaaatctaatccacgggtttctttttaggtcactaatcaatccttcttctctgtgttttt |
7095488 |
T |
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| Q |
123 |
tgtttctttgtccccacatttccatacaacacccccttagttgcatgatattcagttagggacacttcttttcatcaaccaattttaagaatatgtgtgt |
222 |
Q |
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| T |
7095489 |
tgtttctttgtccccacatttccatacaacacccccttagctgcatgatattcagttagggacacttcttttcatcaaccaattttaagaatatgtgtgt |
7095588 |
T |
|
| Q |
223 |
ggcttgaaagggaacttgaatccctcatcttttttaaggatgtgattggagaaaataattttatagaggacctggtccttatgatgatttttagttagtt |
322 |
Q |
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| T |
7095589 |
ggcttgaaagggaacttgaatccctcatcttttttaaggatgtgattggagaaaataattttatagaggacctggtccttatgatgatttttagttagtt |
7095688 |
T |
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| Q |
323 |
tgtctttgataagagatttctagttggctaatgacttcttttttccgaggacatgtattaagtgattgtactttatgatttgggttggtctggtgatgtt |
422 |
Q |
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| T |
7095689 |
tttctttgacaagagatttctagttggctaatgtcttcttttttccgaggacatgtattaagtgattgtgctttatgacttgggttgatctggtgatgtt |
7095788 |
T |
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| Q |
423 |
tgagcctttagagtatgtttcttttaagatctcagattcgattctctctg |
472 |
Q |
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| T |
7095789 |
tgagcctttagagtgtgtttcttttaagatctcagattcgattctctctg |
7095838 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 470
Target Start/End: Complemental strand, 27198712 - 27198680
Alignment:
| Q |
438 |
tgtttcttttaagatctcagattcgattctctc |
470 |
Q |
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| T |
27198712 |
tgtttcttttaagatctcatattcgattctctc |
27198680 |
T |
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