View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902_low_15 (Length: 466)
Name: NF8902_low_15
Description: NF8902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 14 - 450
Target Start/End: Original strand, 31205833 - 31206269
Alignment:
| Q |
14 |
agaagaatgagataagagataaggcaaggagtgtatttatcttgtgccttagaaatagttgatgaaagttgtgacagagaataccacaaagactatatgg |
113 |
Q |
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| T |
31205833 |
agaagaatgagataagagataaggcaaggagtgtatttatcttgtgccttagaaatagttgatgaaagttgtgacagagaataccacaaagactatatgg |
31205932 |
T |
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| Q |
114 |
accaaattggaatcattgtatttgacaaaaccattggctgataggttacttctaaaacaacaaatttacttatttaggaggatagagtcaaagatcataa |
213 |
Q |
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| T |
31205933 |
tccaaattggaatcattgtatttgacaaaaccattggctgataggttacttctgaaacaacaaatctacttatttaggaagatagagtcaaagatcataa |
31206032 |
T |
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| Q |
214 |
tggagcaattggtgaaattcaataaaattattgacgattgagtgaatattgaaagatactctcttttatggaaaggaagacactgatgttttggataaag |
313 |
Q |
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| T |
31206033 |
tggagcaattggtgaaattcaataaaattattgacgattgagtgaatattgaaagatgctctcttttatggaaaggaagacactgatgttttggataaag |
31206132 |
T |
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| Q |
314 |
tctaattagatattaagaccaagaaactaaccatgtttaaaaacttgaacgtgaaattttgagtgtgtcaagaggaagatgtgaaagtaaaggaaaatgg |
413 |
Q |
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| T |
31206133 |
tctaattagatattaagaccaagaaactaaccatgtttaaaaacttgaacgtgaaactttgagtgtgtcaaaaggaagatgtgaaagtaaaggaaaatgg |
31206232 |
T |
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| Q |
414 |
gcggctaaactaaactcatattctagtcacacattga |
450 |
Q |
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| T |
31206233 |
gtggctaaactaaaatcatattctagtcacacattga |
31206269 |
T |
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