View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902_low_19 (Length: 414)
Name: NF8902_low_19
Description: NF8902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902_low_19 |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold0330 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 18344085 - 18343719
Alignment:
| Q |
1 |
ctaagattatattaaatttcataatcttactgattcgttagatgggatggcggacggaactaagaattcattattttttgaggagttgtggactaaccca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18344085 |
ctaagattatattaaatttcataatcttactgattcattagatgggatggcggacggaactaagaattcattattttttgaggagttgtggactaaccca |
18343986 |
T |
|
| Q |
101 |
acattacatcttaaatttataatgaaagagtaaatattcgcccgcgaaaatgtggannnnnnngaatttagaaatttttgccaatatgataat--nnnnn |
198 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
18343985 |
acattacatcttaaatttataatgaaagagtaaatattcgcccgcgaaaatgtggatttttttgaatttagaaatttttgccaatatgataataaaaaaa |
18343886 |
T |
|
| Q |
199 |
nnnnngagaaatatggattcgttagaaccttatatcaaaacaacattatctagttagatatggatagcaaaaaaggtctataagaatccatatttggttc |
298 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
18343885 |
aaaaagacaaatatggattcgttagaaccttatatcaaaacaacattatctagttagatatggatagcaaaaatggtctataagaatccatatttggttc |
18343786 |
T |
|
| Q |
299 |
tatatcaaagcaagatatacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaa |
365 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18343785 |
tatatcaaagcaagatatacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaa |
18343719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 26 - 156
Target Start/End: Original strand, 36638870 - 36639000
Alignment:
| Q |
26 |
cttactgattcgttagatgggatggcggacggaactaagaattcattattttttgaggagttgtggactaacccaacattacatcttaaatttataatga |
125 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36638870 |
cttactaattcattagatgggatggcggacggaactaagaattcattattttttgaggagttgtggactaacccaacattacatcttaaatttataatga |
36638969 |
T |
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| Q |
126 |
aagagtaaatattcgcccgcgaaaatgtgga |
156 |
Q |
| |
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|||||| |||||||||||||||||||||||| |
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| T |
36638970 |
aagagtgaatattcgcccgcgaaaatgtgga |
36639000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 241
Target Start/End: Original strand, 36639056 - 36639090
Alignment:
| Q |
207 |
aaatatggattcgttagaaccttatatcaaaacaa |
241 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| |
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| T |
36639056 |
aaatatggattcgttagaacattatatcaaaacaa |
36639090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 2 - 330
Target Start/End: Original strand, 163252 - 163589
Alignment:
| Q |
2 |
taagattatattaaatttcataatcttactgattcgttagatgggatggcggacggaactaagaattcattattttttgaggagttgtggactaacccaa |
101 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
163252 |
taagattatattaaatttcataatcttactgattcattagatgggatggtggacggaactaagaattcattattttttgaggagttgtggactaatccaa |
163351 |
T |
|
| Q |
102 |
cattacatcttaaatttataatgaaagagt-aaatattcgcccgcgaaaatgtgga-nnnnnnngaatttagaaatttttgcca----atatgataat-- |
193 |
Q |
| |
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||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
163352 |
catcacatcttaaatttataatgaaagagtaaaatattcgcccgcgaaaatgtggatttttttttaatttagaaatttttgccaatatatatgataataa |
163451 |
T |
|
| Q |
194 |
-nnnnnnnnnngagaaatatggattcgttagaaccttatatcaaaacaacattatctagttagatatggatagcaaaaaaggtctataagaatccatatt |
292 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
163452 |
aaaaaaaaaaagacaaatatggattcgttagaaccttatatcaaaacaacattatctagttagatatggatagcaaaaatggtctataaaaatccatatt |
163551 |
T |
|
| Q |
293 |
tggttctatatcaaagcaagatatacaaatttctaata |
330 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||| |
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| T |
163552 |
tggttttatatccaagcaagatatacaaatttctaata |
163589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 365
Target Start/End: Original strand, 163610 - 163645
Alignment:
| Q |
330 |
atgtcaaaaaatcccgcgattgtattctattttaaa |
365 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
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|
| T |
163610 |
atgtcaaaaaatcccgcgattctattctattttaaa |
163645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 6 - 303
Target Start/End: Original strand, 9857653 - 9857946
Alignment:
| Q |
6 |
attatattaaatttcataatcttactgattcgttagatgggatggcggacggaactaagaattcattattttttgaggagttgtggactaacccaacatt |
105 |
Q |
| |
|
|||||||||||||| ||||||||| |||||| |||||| |||||| |||| |||||||||||||||||||||||||||||||||| |||| | ||||| |
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| T |
9857653 |
attatattaaatttaataatcttattgattcattagattggatggtggacaaaactaagaattcattattttttgaggagttgtgggctaatctgacatt |
9857752 |
T |
|
| Q |
106 |
acatcttaaatttataatgaaagagt-aaatattcgcccgcgaaaatgtggannnnnnngaatttagaaatttttgccaatatgataatnnnnnnnnnng |
204 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| | | ||||||||||| ||||||| ||||||||||||||||||| | | |
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| T |
9857753 |
acatcttaaatttataatgaaagagtaaaatattcacatgtgaaaatgtggatttttttgaatttataaatttttgccaatatgat--taaaaaaaaaag |
9857850 |
T |
|
| Q |
205 |
agaaatatggattcgttagaaccttatatcaaaacaacattatctagttagatatggatagcaaaaaaggtctataagaatccatatttggttctatat |
303 |
Q |
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| ||||||||||| ||||||||| |||||||||||||||||||||||||| || ||||||||||| |||||||| |||||||||||| ||||||||| |
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| T |
9857851 |
acaaatatggattttttagaacct--tatcaaaacaacattatctagttagacat-gatagcaaaaatggtctatacgaatccatatttcgttctatat |
9857946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 31058724 - 31058773
Alignment:
| Q |
316 |
tacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaa |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31058724 |
tacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaa |
31058773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0330 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0330
Description:
Target: scaffold0330; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 330
Target Start/End: Complemental strand, 13478 - 13433
Alignment:
| Q |
285 |
tccatatttggttctatatcaaagcaagatatacaaatttctaata |
330 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
13478 |
tccatatttggttctatatcaaagcaaaatatacaaatttctaata |
13433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0330; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 365
Target Start/End: Complemental strand, 13412 - 13377
Alignment:
| Q |
330 |
atgtcaaaaaatcccgcgattgtattctattttaaa |
365 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13412 |
atgtcaaaaaatctcgcgattgtattctattttaaa |
13377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 31878210 - 31878258
Alignment:
| Q |
108 |
atcttaaatttataatgaaagagtaaatattcgcccgcgaaaatgtgga |
156 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||| ||| |||||||||| |
|
|
| T |
31878210 |
atcttaaatttataattaaagagtaattattcggtcgcaaaaatgtgga |
31878258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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