View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902_low_21 (Length: 410)
Name: NF8902_low_21
Description: NF8902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 49 - 402
Target Start/End: Complemental strand, 52030994 - 52030641
Alignment:
| Q |
49 |
gcttaattacctgcgtagtgagaacaagaatccaactggtaagaaaggtaatcttcctgtaataaaatacacgaatgatatcaacaatactgagagcata |
148 |
Q |
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| T |
52030994 |
gcttaattacctgcgtagtgagaacaagaatccaactggtaagaaaggtaatcttcctgtaataaaatacacgaatgatatcaacaatactgagagcata |
52030895 |
T |
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| Q |
149 |
agcagtgccactcccaaacgcagcaccagcatttgcaaacatggaaataagcacgtgttctttcacgttaaaaggacccggatttaacgaaaactctctc |
248 |
Q |
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| T |
52030894 |
agcagtgccactcccaaacgcagcaccagcatttgcaaacatggaaataagcacgtgctctttcacgttaaaaggacccggatttaacgaaaactctctc |
52030795 |
T |
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| Q |
249 |
tctccaaaaccaatgatccgaaacttttttgtaggaagcaccttagccatgaatcgaccaataggaagcgttgcaacctgaattgttatcattgtaacca |
348 |
Q |
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| T |
52030794 |
tctccaaaaccaatgatccgaaacttttttgtaggaagcaccttagccatgaatcgaccaataggaagcgttgcaacctgaattgttatcattgtaaccg |
52030695 |
T |
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| Q |
349 |
ttaatggttgggttctgtaaatgaaaaatgtgtttatgtaagaaagcaacacca |
402 |
Q |
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| T |
52030694 |
ttaatggttgggttctgtaaatgaaaaatgtgtttatgtaagaaagcaacacca |
52030641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 36900340 - 36900259
Alignment:
| Q |
161 |
cccaaacgcagcaccagcatttgcaaacatggaaataagcacgtgttctttcacgttaaaaggacccggatttaacgaaaac |
242 |
Q |
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| T |
36900340 |
cccaaacgcagccccagcatttgcaaatatggtaataagaacatgttccttcatgttaaacggacctgggttaaacgaaaac |
36900259 |
T |
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