View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902_low_22 (Length: 407)
Name: NF8902_low_22
Description: NF8902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 3984679 - 3985049
Alignment:
| Q |
18 |
aaaggggtggttattaccaatcactcattgtcggtatgtgttgcatggttgttccttcattgatgttttttaaaattatggaatattagttagatgtaat |
117 |
Q |
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| T |
3984679 |
aaaggggtggttattaccaatcactcattgtcggtatgtgttgcatggttgttccttcattgatgttttttaaaattatggaatattagttagatgtaat |
3984778 |
T |
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| Q |
118 |
ttcaactttcaactcaacattgcttatcttgccaacattccctagatctgtatgaaaataaggtatatacaataaacaacttatgcacttcctactctac |
217 |
Q |
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| T |
3984779 |
ttcaactttcaactcaatattgcttatcttgccaacattccctatatctgtatgaaaataaggtatatacaataaacaacttatgcacttcctactctac |
3984878 |
T |
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| Q |
218 |
acaacaatatacgtggctctatttgagctttaagtgcggcaactgtttgtaaagttgtgctatcttatgagtataagaatcttgcaagtagcattatagg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| |
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| T |
3984879 |
acaacaatatacgtggctctatttgagctttaagtgcggcaactgtttgtaaagttgtgctattttatgagtgtaagaatcttgtaagtagcattatagg |
3984978 |
T |
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| Q |
318 |
attgcatgcaggcgcatcatgcagacctccgcagatttgcatggttgcaaattcaaatttaaaatagtaaa |
388 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3984979 |
attgcatgcaggcacatcatgcagacctccgcagatttgcatggttgcaaattcaaatttaaaatagtaaa |
3985049 |
T |
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