View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8902_low_29 (Length: 401)
Name: NF8902_low_29
Description: NF8902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902_low_29 |
 | |
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| [»] scaffold0229 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 48236092 - 48235697
Alignment:
| Q |
1 |
acatccaaatatggtcctcctccttggagcatgtcctgagcattgttgtttggtgtatgagtacatggaaaacggtaccttagaagatagattatttcgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48236092 |
acatccaaatatggtcctcctccttggagcatgtcctgagcattgttgtttggtgtatgagtacatggaaaacggtaccttagaagatagattatttcgg |
48235993 |
T |
|
| Q |
101 |
aaaaataactctaagcctctatcatggcaaaaaaggttcaaaatagcagctgagattgcaactgcacttcttttccttcaccaaacaaagccagagccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48235992 |
aaaaataactctaagcctctatcatggcaaaaaaggttcaaaatagcagctgagattgcaactgcacttcttttccttcaccaaacaaagccagagccaa |
48235893 |
T |
|
| Q |
201 |
tcgtgcatcgagaccttaaaccatcaaacattttgttagacaaaaattacgtgagcaaagtcgctgatgtcggtctcgcaagattagttcctccttctgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48235892 |
tcgtgcatcgagaccttaaaccatcaaacattttgttagacaaaaattacgtgagcaaagtcgctgatgtcggtctcgcaagattagttcctccttctgt |
48235793 |
T |
|
| Q |
301 |
agctgacagcgtgacacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatcaacaaacaggaatgttaacaccaaa |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48235792 |
agctgacagcgtgacacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatcaacaaacaggaatgttaacaccaaa |
48235697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 388
Target Start/End: Complemental strand, 50439550 - 50439335
Alignment:
| Q |
173 |
ttccttcaccaaacaaagccagagccaatcgtgcatcgagaccttaaaccatcaaacattttgttagacaaaaattacgtgagcaaagtcgctgatgtcg |
272 |
Q |
| |
|
||||||||||||||||| ||||| || || || ||| ||||| | |||||| |||||| ||| |||||| ||| || || |||| | |||||| | |
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|
| T |
50439550 |
ttccttcaccaaacaaaaccagaacctatagtacatagagacttgaaaccaggaaacatcttgctagacagaaactatgtagccaaaattagtgatgttg |
50439451 |
T |
|
| Q |
273 |
gtctcgcaagattagttcctccttctgtagctgacagcgtgacacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatca |
372 |
Q |
| |
|
|| | |||||| | ||||| || ||||| || ||||| ||||| |||||| |||||| || | || |||||||| |||||||| ||||| |||||||| |
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|
| T |
50439450 |
gtttggcaagacttgttccgccatctgtggccgacagtgtgacgcaatatcgcatgacggcaacagcaggaacattctgttatatagatcctgagtatca |
50439351 |
T |
|
| Q |
373 |
acaaacaggaatgtta |
388 |
Q |
| |
|
||||||||||||||| |
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|
| T |
50439350 |
gcaaacaggaatgtta |
50439335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 3686408 - 3686803
Alignment:
| Q |
1 |
acatccaaatatggtcctcctccttggagcatgtcctgagcattgttgtttggtgtatgagtacatggaaaacggtaccttagaagatagattatttcgg |
100 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||| || || | |||||||| ||||| |||||||| || |||| ||||||||| |||||||| | |
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|
| T |
3686408 |
acatcccaatatggtcctcctccttggtgcatgtcaagaatatggatgtttggtatatgaatacatggacaatggtagcttagaagacagattattaaga |
3686507 |
T |
|
| Q |
101 |
aaaaataactctaagcctctatcatggcaaaaaaggttcaaaatagcagctgagattgcaactgcacttcttttccttcaccaaacaaagccagagccaa |
200 |
Q |
| |
|
||| ||| | || | |||||| |||| | ||| ||||||| ||| |||||||| |||||||||||||||||||||||||| ||||| ||| |
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|
| T |
3686508 |
aaacgaaacacccctccaattccatggcgaaaacgtttcgaaatagcttatgaaattgcaacagcacttcttttccttcaccaaacaaaaccagaagcaa |
3686607 |
T |
|
| Q |
201 |
tcgtgcatcgagaccttaaaccatcaaacattttgttagacaaaaattacgtgagcaaagtcgctgatgtcggtctcgcaagattagttcctccttctgt |
300 |
Q |
| |
|
| || ||| |||||||||||||| | |||||| | ||||||||||||| || |||||| | |||||| ||| | ||||||||||| || |||||||| |
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|
| T |
3686608 |
ttgttcatagagaccttaaaccagccaacattctcttagacaaaaattttgttagcaaaataagtgatgttggtttagcaagattagtaccaccttctgt |
3686707 |
T |
|
| Q |
301 |
agctgacagcgtgacacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatcaacaaacaggaatgttaacaccaaa |
396 |
Q |
| |
|
|||||| || ||||||||| |||||||| ||| ||||||||||| ||||| |||||||| ||||||||| | ||||||| |||||| |||| |
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|
| T |
3686708 |
agctgattctgtcacacaatatcacatgactgaagcagctggaacattatgttacattgatccagagtatcaaaatacaggaaaattaacaacaaa |
3686803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 173 - 387
Target Start/End: Original strand, 1273956 - 1274170
Alignment:
| Q |
173 |
ttccttcaccaaacaaagccagagccaatcgtgcatcgagaccttaaaccatcaaacattttgttagacaaaaattacgtgagcaaag-tcgctgatgtc |
271 |
Q |
| |
|
||||| ||||||||||| || |||||| | || ||| |||||||||||||| ||||||| ||| | ||| || ||||| |||||| | |||||| |
|
|
| T |
1273956 |
ttcctccaccaaacaaaacctgagccactagtacatagagaccttaaaccagcaaacatcttgcttgaccgcaactacgtc-gcaaagattagtgatgtt |
1274054 |
T |
|
| Q |
272 |
ggtctcgcaagattagttcctccttctgtagctgacagcgtgacacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatc |
371 |
Q |
| |
|
||| | |||||| |||| || || || ||||| |||| |||||||||||| ||||| || ||||| |||||||| ||||| || ||||| ||||| | |
|
|
| T |
1274055 |
ggtttggcaagactagtaccgccatcagtagcagacaatgtgacacaatatcgaatgacatcggctgccggaacattctgttacatagatcctgagtacc |
1274154 |
T |
|
| Q |
372 |
aacaaacaggaatgtt |
387 |
Q |
| |
|
|||| ||||||||||| |
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|
| T |
1274155 |
aacagacaggaatgtt |
1274170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 314 - 385
Target Start/End: Original strand, 45728271 - 45728342
Alignment:
| Q |
314 |
acacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatcaacaaacaggaatg |
385 |
Q |
| |
|
||||||| || |||||| ||||| || |||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
45728271 |
acacaatgttgcatgacatcagcagcgggaacattctgttatattgatcccgagtatcagcaaacaggaatg |
45728342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 258
Target Start/End: Original strand, 42673868 - 42673989
Alignment:
| Q |
137 |
ttcaaaatagcagctgagattgcaactgcacttcttttccttcaccaaacaaagccagagccaatcgtgcatcgagaccttaaaccatcaaacattttgt |
236 |
Q |
| |
|
|||||||||||| | |||||||| || | ||||||||||||||||| ||||| ||||| || | |||||||| || || |||||| |||||||| | | |
|
|
| T |
42673868 |
ttcaaaatagcatcagagattgcgacaggccttcttttccttcaccagacaaaaccagaaccggttgtgcatcgcgatctcaaaccagcaaacattctct |
42673967 |
T |
|
| Q |
237 |
tagacaaaaattacgtgagcaa |
258 |
Q |
| |
|
|||||| ||| ||||| ||||| |
|
|
| T |
42673968 |
tagacagaaactacgtaagcaa |
42673989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 382
Target Start/End: Original strand, 42674072 - 42674113
Alignment:
| Q |
341 |
ggaacattttgttatattgatcccgagtatcaacaaacagga |
382 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
42674072 |
ggaacatttttttatattgatccggagtatcaacaaacagga |
42674113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 258
Target Start/End: Original strand, 6516733 - 6516840
Alignment:
| Q |
151 |
tgagattgcaactgcacttcttttccttcaccaaacaaagccagagccaatcgtgcatcgagaccttaaaccatcaaacattttgttagacaaaaattac |
250 |
Q |
| |
|
||||||||| |||| |||||||||||||||||| |||||||||| ||||| || ||||| || | |||||| ||||||| | ||||||||||| ||| |
|
|
| T |
6516733 |
tgagattgccactggccttcttttccttcaccaatcaaagccagatccaatagtacatcgtgatatgaaaccaggaaacattctcttagacaaaaactac |
6516832 |
T |
|
| Q |
251 |
gtgagcaa |
258 |
Q |
| |
|
|| ||||| |
|
|
| T |
6516833 |
gttagcaa |
6516840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 378
Target Start/End: Original strand, 6516920 - 6516960
Alignment:
| Q |
338 |
gctggaacattttgttatattgatcccgagtatcaacaaac |
378 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
6516920 |
gctggaacattttgctacattgatcctgagtatcaacaaac |
6516960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 387
Target Start/End: Original strand, 56 - 178
Alignment:
| Q |
265 |
tgatgtcggtctcgcaagattagttcctccttctgtagctgacagcgtgacacaatattacatgacttcagctgctggaacattttgttatattgatccc |
364 |
Q |
| |
|
|||||| ||| | |||||| |||| || || || ||||| |||| |||||||||||| ||||| || ||||| |||||||| ||||| || ||||| |
|
|
| T |
56 |
tgatgttggtttggcaagactagtaccgccatcagtagcagacaatgtgacacaatatcgaatgacatcggctgccggaacattctgttacatagatcct |
155 |
T |
|
| Q |
365 |
gagtatcaacaaacaggaatgtt |
387 |
Q |
| |
|
||||| ||||| ||||||||||| |
|
|
| T |
156 |
gagtaccaacagacaggaatgtt |
178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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