View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902_low_30 (Length: 401)

Name: NF8902_low_30
Description: NF8902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902_low_30
NF8902_low_30
[»] chr3 (2 HSPs)
chr3 (1-396)||(48235697-48236092)
chr3 (173-388)||(50439335-50439550)
[»] chr1 (2 HSPs)
chr1 (1-396)||(3686408-3686803)
chr1 (173-387)||(1273956-1274170)
[»] chr2 (3 HSPs)
chr2 (314-385)||(45728271-45728342)
chr2 (137-258)||(42673868-42673989)
chr2 (341-382)||(42674072-42674113)
[»] chr8 (2 HSPs)
chr8 (151-258)||(6516733-6516840)
chr8 (338-378)||(6516920-6516960)
[»] scaffold0229 (1 HSPs)
scaffold0229 (265-387)||(56-178)


Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 48236092 - 48235697
Alignment:
Q  1 acatccaaatatggtcctcctccttggagcatgtcctgagcattgttgtttggtgtatgagtacatggaaaacggtaccttagaagatagattatttcgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48236092 acatccaaatatggtcctcctccttggagcatgtcctgagcattgttgtttggtgtatgagtacatggaaaacggtaccttagaagatagattatttcgg 48235993  T
Q  101 aaaaataactctaagcctctatcatggcaaaaaaggttcaaaatagcagctgagattgcaactgcacttcttttccttcaccaaacaaagccagagccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48235992 aaaaataactctaagcctctatcatggcaaaaaaggttcaaaatagcagctgagattgcaactgcacttcttttccttcaccaaacaaagccagagccaa 48235893  T
Q  201 tcgtgcatcgagaccttaaaccatcaaacattttgttagacaaaaattacgtgagcaaagtcgctgatgtcggtctcgcaagattagttcctccttctgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48235892 tcgtgcatcgagaccttaaaccatcaaacattttgttagacaaaaattacgtgagcaaagtcgctgatgtcggtctcgcaagattagttcctccttctgt 48235793  T
Q  301 agctgacagcgtgacacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatcaacaaacaggaatgttaacaccaaa 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48235792 agctgacagcgtgacacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatcaacaaacaggaatgttaacaccaaa 48235697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 388
Target Start/End: Complemental strand, 50439550 - 50439335
Alignment:
Q  173 ttccttcaccaaacaaagccagagccaatcgtgcatcgagaccttaaaccatcaaacattttgttagacaaaaattacgtgagcaaagtcgctgatgtcg 272  Q
    ||||||||||||||||| ||||| || || || ||| ||||| | ||||||  |||||| ||| |||||| ||| || ||   |||| |   |||||| |    
T  50439550 ttccttcaccaaacaaaaccagaacctatagtacatagagacttgaaaccaggaaacatcttgctagacagaaactatgtagccaaaattagtgatgttg 50439451  T
Q  273 gtctcgcaagattagttcctccttctgtagctgacagcgtgacacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatca 372  Q
    || | |||||| | ||||| || ||||| || ||||| ||||| ||||||  ||||||  || | || |||||||| |||||||| ||||| ||||||||    
T  50439450 gtttggcaagacttgttccgccatctgtggccgacagtgtgacgcaatatcgcatgacggcaacagcaggaacattctgttatatagatcctgagtatca 50439351  T
Q  373 acaaacaggaatgtta 388  Q
     |||||||||||||||    
T  50439350 gcaaacaggaatgtta 50439335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 3686408 - 3686803
Alignment:
Q  1 acatccaaatatggtcctcctccttggagcatgtcctgagcattgttgtttggtgtatgagtacatggaaaacggtaccttagaagatagattatttcgg 100  Q
    |||||| |||||||||||||||||||| |||||||  ||  || | |||||||| ||||| |||||||| || |||| ||||||||| ||||||||  |     
T  3686408 acatcccaatatggtcctcctccttggtgcatgtcaagaatatggatgtttggtatatgaatacatggacaatggtagcttagaagacagattattaaga 3686507  T
Q  101 aaaaataactctaagcctctatcatggcaaaaaaggttcaaaatagcagctgagattgcaactgcacttcttttccttcaccaaacaaagccagagccaa 200  Q
    |||   ||| |    ||  |  |||||| |||| | ||| |||||||   ||| |||||||| |||||||||||||||||||||||||| |||||  |||    
T  3686508 aaacgaaacacccctccaattccatggcgaaaacgtttcgaaatagcttatgaaattgcaacagcacttcttttccttcaccaaacaaaaccagaagcaa 3686607  T
Q  201 tcgtgcatcgagaccttaaaccatcaaacattttgttagacaaaaattacgtgagcaaagtcgctgatgtcggtctcgcaagattagttcctccttctgt 300  Q
    | || ||| |||||||||||||| | |||||| | |||||||||||||  || |||||| |   |||||| ||| | ||||||||||| || ||||||||    
T  3686608 ttgttcatagagaccttaaaccagccaacattctcttagacaaaaattttgttagcaaaataagtgatgttggtttagcaagattagtaccaccttctgt 3686707  T
Q  301 agctgacagcgtgacacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatcaacaaacaggaatgttaacaccaaa 396  Q
    ||||||    || ||||||||| ||||||||  ||| ||||||||||| ||||| |||||||| ||||||||| | |||||||  |||||| ||||    
T  3686708 agctgattctgtcacacaatatcacatgactgaagcagctggaacattatgttacattgatccagagtatcaaaatacaggaaaattaacaacaaa 3686803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 173 - 387
Target Start/End: Original strand, 1273956 - 1274170
Alignment:
Q  173 ttccttcaccaaacaaagccagagccaatcgtgcatcgagaccttaaaccatcaaacattttgttagacaaaaattacgtgagcaaag-tcgctgatgtc 271  Q
    ||||| ||||||||||| || |||||| | || ||| |||||||||||||| ||||||| ||| | |||   || |||||  |||||| |   ||||||     
T  1273956 ttcctccaccaaacaaaacctgagccactagtacatagagaccttaaaccagcaaacatcttgcttgaccgcaactacgtc-gcaaagattagtgatgtt 1274054  T
Q  272 ggtctcgcaagattagttcctccttctgtagctgacagcgtgacacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatc 371  Q
    ||| | |||||| |||| || || || ||||| ||||  ||||||||||||   ||||| || ||||| |||||||| ||||| || ||||| ||||| |    
T  1274055 ggtttggcaagactagtaccgccatcagtagcagacaatgtgacacaatatcgaatgacatcggctgccggaacattctgttacatagatcctgagtacc 1274154  T
Q  372 aacaaacaggaatgtt 387  Q
    |||| |||||||||||    
T  1274155 aacagacaggaatgtt 1274170  T

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Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 314 - 385
Target Start/End: Original strand, 45728271 - 45728342
Alignment:
Q  314 acacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatcaacaaacaggaatg 385  Q
    ||||||| || |||||| ||||| || |||||||| ||||||||||||||||||||||| ||||||||||||    
T  45728271 acacaatgttgcatgacatcagcagcgggaacattctgttatattgatcccgagtatcagcaaacaggaatg 45728342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 258
Target Start/End: Original strand, 42673868 - 42673989
Alignment:
Q  137 ttcaaaatagcagctgagattgcaactgcacttcttttccttcaccaaacaaagccagagccaatcgtgcatcgagaccttaaaccatcaaacattttgt 236  Q
    |||||||||||| | |||||||| || |  ||||||||||||||||| ||||| ||||| ||  | |||||||| || || |||||| |||||||| | |    
T  42673868 ttcaaaatagcatcagagattgcgacaggccttcttttccttcaccagacaaaaccagaaccggttgtgcatcgcgatctcaaaccagcaaacattctct 42673967  T
Q  237 tagacaaaaattacgtgagcaa 258  Q
    |||||| ||| ||||| |||||    
T  42673968 tagacagaaactacgtaagcaa 42673989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 382
Target Start/End: Original strand, 42674072 - 42674113
Alignment:
Q  341 ggaacattttgttatattgatcccgagtatcaacaaacagga 382  Q
    |||||||||| |||||||||||| ||||||||||||||||||    
T  42674072 ggaacatttttttatattgatccggagtatcaacaaacagga 42674113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 258
Target Start/End: Original strand, 6516733 - 6516840
Alignment:
Q  151 tgagattgcaactgcacttcttttccttcaccaaacaaagccagagccaatcgtgcatcgagaccttaaaccatcaaacattttgttagacaaaaattac 250  Q
    ||||||||| ||||  |||||||||||||||||| |||||||||| ||||| || ||||| ||  | ||||||  ||||||| | ||||||||||| |||    
T  6516733 tgagattgccactggccttcttttccttcaccaatcaaagccagatccaatagtacatcgtgatatgaaaccaggaaacattctcttagacaaaaactac 6516832  T
Q  251 gtgagcaa 258  Q
    || |||||    
T  6516833 gttagcaa 6516840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 378
Target Start/End: Original strand, 6516920 - 6516960
Alignment:
Q  338 gctggaacattttgttatattgatcccgagtatcaacaaac 378  Q
    |||||||||||||| || |||||||| ||||||||||||||    
T  6516920 gctggaacattttgctacattgatcctgagtatcaacaaac 6516960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 387
Target Start/End: Original strand, 56 - 178
Alignment:
Q  265 tgatgtcggtctcgcaagattagttcctccttctgtagctgacagcgtgacacaatattacatgacttcagctgctggaacattttgttatattgatccc 364  Q
    |||||| ||| | |||||| |||| || || || ||||| ||||  ||||||||||||   ||||| || ||||| |||||||| ||||| || |||||     
T  56 tgatgttggtttggcaagactagtaccgccatcagtagcagacaatgtgacacaatatcgaatgacatcggctgccggaacattctgttacatagatcct 155  T
Q  365 gagtatcaacaaacaggaatgtt 387  Q
    ||||| ||||| |||||||||||    
T  156 gagtaccaacagacaggaatgtt 178  T

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