View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902_low_33 (Length: 377)
Name: NF8902_low_33
Description: NF8902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 7502560 - 7502906
Alignment:
| Q |
18 |
agatgcctgtggaggaaagcgcgtttagaatttcactggcgatgagattggtgtctccgtaagctgaaatggaaagttctccaagaaggtttgctttcga |
117 |
Q |
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| T |
7502560 |
agatgcctgtggaggaaagcgcgtttagaatttcactggcgatgagattggtgtctccgtaagctgaaatggaaagttctccaagaaggtttgctttcga |
7502659 |
T |
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| Q |
118 |
cagagctaagcgaatgttgttagcaatggttttaacatactcggggtttgttggaaatttacagtcgttaatgttccaccaaactgagatcttcgccttc |
217 |
Q |
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| T |
7502660 |
cagagctaagcgaatgttgttagcaatggttttaacatactcggggtttgttggaaatttacagtcgttaatgttccaccaaactgagatcttcgccttc |
7502759 |
T |
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| Q |
218 |
acatgttccacatccatcttgaagggaagtctggttcgataggcgtgagagaaatatcaaagtattgaattaaattacagataagaaacattactgaatg |
317 |
Q |
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| T |
7502760 |
acatgttccacatccatcttgaagggaagtctggttcgaaaggcgtgagagaaatatcaaagtattgaattaaattacagataagaaacattactgaatg |
7502859 |
T |
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| Q |
318 |
atcaagactnnnnnnnntagacatcattccaaaaacagtgatgtcca |
364 |
Q |
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| T |
7502860 |
atcaagactaaaaaaaatagacatcattccaaaaacagtgatatcca |
7502906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 23 - 270
Target Start/End: Original strand, 7499231 - 7499477
Alignment:
| Q |
23 |
cctgtggaggaaagcgcgtttagaatttcactggcgatgagattggtgtctccgtaagctgaaatggaaagttctccaagaaggtttgctttcgacagag |
122 |
Q |
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| T |
7499231 |
cctgtggaggaaataccgtttagaatttcactggagatgagattggtgtctccataagccgtaatggaaatttcgccatgaagtttggctttcaacagga |
7499330 |
T |
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| Q |
123 |
ctaagcgaatgttgttagcaatggttttaacatactcggggtttgttggaaatttacagtcgttaatgttccaccaaactgagatcttcgcc-ttcacat |
221 |
Q |
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||||| |||||||||||| |||| | |||| |||| |||||||||||| ||||||||| | |||||||||||||||||||||||||||| ||||||| |
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| T |
7499331 |
ctaagggaatgttgttagaaatgttggtaacgctctcgaggtttgttggaactttacagtcatcaatgttccaccaaactgagatcttcgcctttcacat |
7499430 |
T |
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| Q |
222 |
gttccacatccatcttgaagggaagtctggttcgataggcgtgagagaa |
270 |
Q |
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| T |
7499431 |
attccacattcatttcgaa--gaagtctggttcgaaaggcgtgagagaa |
7499477 |
T |
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