View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902_low_35 (Length: 308)
Name: NF8902_low_35
Description: NF8902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 17 - 296
Target Start/End: Complemental strand, 37217110 - 37216832
Alignment:
| Q |
17 |
acaggcacatggaatggattgataccaacgagaaaaaattattctctatactatcatactatgcttgttagaatgagtttaaaacaaatttaatgaattc |
116 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37217110 |
acaggcacatggaatggattgataccaacaagaaaaaattattctctatactatcatactatgcttgttagaatgagtttaaaacaaatttaatgaattc |
37217011 |
T |
|
| Q |
117 |
tggttcatagcacctttcctgcatttggaatgattttaaatataccattcaaaaagaaagaaattacagtggaatgagtctctgagggaatataaactcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37217010 |
tggttcatagcacctttcctgcatttggaatgattttaaatataccattcaaaaagaaagaaattacagtggaatgagtctctgagggaatataaactcc |
37216911 |
T |
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| Q |
217 |
gcccccttgaggcacaccagacacttaccactagttgcaaagcaaaactaacaatgctatgattacaaacctggcctctc |
296 |
Q |
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| T |
37216910 |
g-ccccttgaggcacgccagacacttaacactagttgcaaagcaaaactaacaatgctatgattacaaacctggcctctc |
37216832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 37223063 - 37222952
Alignment:
| Q |
72 |
atactatgcttgttagaatgagtttaaaacaaatttaatgaattctggttcatagcacctttcctgcatttggaatgattttaaatataccattcaaaaa |
171 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||| ||||||||| | |||| ||| ||| |
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| T |
37223063 |
atactatgcttgttagaatgagtttaaaacaaatttaatgaattctggtacatagcacctttcctgtatatggtatgattttatacatacaattgaaagt |
37222964 |
T |
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| Q |
172 |
gaaagaaattac |
183 |
Q |
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|| ||||||||| |
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| T |
37222963 |
gagagaaattac |
37222952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 72 - 191
Target Start/End: Complemental strand, 37231994 - 37231875
Alignment:
| Q |
72 |
atactatgcttgttagaatgagtttaaaacaaatttaatgaattctggttcatagcacctttcctgcatttggaatgattttaaatataccattcaaaaa |
171 |
Q |
| |
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||||||||||||||||||| |||||| |||||||| ||||| |||||| |||||||||||||||| || ||| ||||||||| |||||||||| |||| |
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| T |
37231994 |
atactatgcttgttagaataagtttataacaaattcgatgaaatctggtgcatagcacctttcctgtatatggtatgattttatatataccattgaaaat |
37231895 |
T |
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| Q |
172 |
gaaagaaattacagtggaat |
191 |
Q |
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|| ||||||||||||||||| |
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| T |
37231894 |
gagagaaattacagtggaat |
37231875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 294
Target Start/End: Complemental strand, 37231850 - 37231756
Alignment:
| Q |
199 |
tgagggaatataaactccgcccccttgaggcacaccagacacttaccactagttgcaaagcaaaactaacaatgctatgattacaaacctggcctc |
294 |
Q |
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||||||||||| ||||||| ||| ||||||||| || ||| | |||||||| |||||||| ||||||||||| | |||||| |||||||| ||||| |
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| T |
37231850 |
tgagggaatatgaactccgtccc-ttgaggcacgcccgactcataccactaattgcaaagtaaaactaacaaagttatgataacaaaccttgcctc |
37231756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 37222879 - 37222837
Alignment:
| Q |
254 |
caaagcaaaactaacaatgctatgattacaaacctggcctctc |
296 |
Q |
| |
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||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
37222879 |
caaagtaaaactaacaatgctacgattacaaacctggcctctc |
37222837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 37385918 - 37385962
Alignment:
| Q |
252 |
tgcaaagcaaaactaacaatgctatgattacaaacctggcctctc |
296 |
Q |
| |
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||||||| |||||||||||||||||||| |||||||| ||||||| |
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| T |
37385918 |
tgcaaagtaaaactaacaatgctatgataacaaaccttgcctctc |
37385962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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