View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902_low_39 (Length: 283)

Name: NF8902_low_39
Description: NF8902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902_low_39
NF8902_low_39
[»] chr1 (8 HSPs)
chr1 (1-262)||(48585412-48585673)
chr1 (1-260)||(48639985-48640244)
chr1 (1-205)||(48661637-48661841)
chr1 (1-207)||(48667232-48667438)
chr1 (33-205)||(48618046-48618218)
chr1 (33-205)||(48628983-48629155)
chr1 (1-205)||(48653205-48653409)
chr1 (81-203)||(11547396-11547518)
[»] chr3 (1 HSPs)
chr3 (42-205)||(19665402-19665565)
[»] chr8 (1 HSPs)
chr8 (33-134)||(27228284-27228385)


Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 48585412 - 48585673
Alignment:
Q  1 taaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaacagaaggaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585412 taaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaacagaaggaa 48585511  T
Q  101 tattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagcatgattcttgataatttg 200  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  48585512 tattgtgttcattagcaacatcacaaacccatggaaaaaaataattgtttatgatacatgaaaatggtttgtttaaatcagcatgattcttgatcatttg 48585611  T
Q  201 agaaatagagggtctaccagcaacctcaatttcagcggagtgctgaagagctctgaaggctg 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585612 agaaatagagggtctaccagcaacctcaatttcagcggagtgctgaagagctctgaaggctg 48585673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 48639985 - 48640244
Alignment:
Q  1 taaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaacagaaggaa 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  48639985 taaggttcttcatttgtagggaaagatgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgacaaaacagaaggaa 48640084  T
Q  101 tattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagcatgattcttgataatttg 200  Q
    ||||||||||||||||||| ||||||||||||||       || |||||||||||||||||||||||||||||| |||| ||||||||||| || |||||    
T  48640085 tattgtgttcattagcaacgtcacaaacccatggaaaaaaatagttgtttatgatacatgaaaatggtttgtttgaatcggcatgattctttatcatttg 48640184  T
Q  201 agaaatagagggtctaccagcaacctcaatttcagcggagtgctgaagagctctgaaggc 260  Q
     |||||| || |||| ||||||||||||||||||||  ||||||||||||||||||||||    
T  48640185 tgaaataaagtgtctgccagcaacctcaatttcagcatagtgctgaagagctctgaaggc 48640244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 48661637 - 48661841
Alignment:
Q  1 taaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaacagaaggaa 100  Q
    ||||||||||||||||  |||||||||   |||||||||||||||| |||| ||  ||  ||||| |||  ||||||||||||| ||||| |||||||||    
T  48661637 taaggttcttcatttgatgggaaaggtaccaatttgtggacatagtcatagcaaacggcaaaaactgcactggaattagtccataataaagcagaaggaa 48661736  T
Q  101 tattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagcatgattcttgataatttg 200  Q
    |||||||||||  ||| | |||||||||||||||         ||||||||||| |||||||| |||||||||| ||||||||||||||||||| |||||    
T  48661737 tattgtgttcaaaagctatatcacaaacccatggaagaaatggattgtttatgacacatgaaattggtttgtttgaatcagcatgattcttgatcatttg 48661836  T
Q  201 agaaa 205  Q
    |||||    
T  48661837 agaaa 48661841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 48667232 - 48667438
Alignment:
Q  1 taaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaacagaaggaa 100  Q
    |||||||||||||||| ||||||||||   |||||||||||||| | |||| || ||||||||||||||   |||||||||||| | ||| |||||||||    
T  48667232 taaggttcttcatttgaagggaaaggtaacaatttgtggacataatcatagcaaatggtgaaaacagcactagaattagtccataacaaagcagaaggaa 48667331  T
Q  101 tattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagcatgattcttgataatttg 200  Q
    |||||||||||  ||| | ||||| |||||||||          |||||||| |||||||||| |||||||||  |||||||||||||||| || |||||    
T  48667332 tattgtgttcaaaagctatatcactaacccatggaaaaaaagggttgtttataatacatgaaattggtttgttcgaatcagcatgattctttatcatttg 48667431  T
Q  201 agaaata 207  Q
    |||||||    
T  48667432 agaaata 48667438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 33 - 205
Target Start/End: Complemental strand, 48618218 - 48618046
Alignment:
Q  33 tttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccat 132  Q
    |||||||| ||||||||||||||  |  ||||||||||  || | | ||||| | ||| |||||||||||   ||||||| ||| |||||||||||||||    
T  48618218 tttgtggaaatagttatagtaagcagaaaaaacagcagttgattgaatccataacaaagcagaaggaataccatgttcatcagctacatcacaaacccat 48618119  T
Q  133 ggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagcatgattcttgataatttgagaaa 205  Q
    ||         ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  48618118 ggaacaaaaggattgtttatgatacatgaaaatggtttgtttgaatcagcatgattcttgatcatttgagaaa 48618046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 33 - 205
Target Start/End: Original strand, 48628983 - 48629155
Alignment:
Q  33 tttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccat 132  Q
    |||||||||||||||||||||||||| ||||||||||   |||||| ||||||||||| |||||||||| |  ||||||  ||| ||||| |||||||||    
T  48628983 tttgtggacatagttatagtaagtggcgaaaacagcactagaattattccatgataaagcagaaggaatgtcatgttcaaaagctacatcgcaaacccat 48629082  T
Q  133 ggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagcatgattcttgataatttgagaaa 205  Q
    ||         ||||| |||||||||||||| ||||||  || ||||||||||||||||||| |||| |||||    
T  48629083 ggaagaaaaggattgtatatgatacatgaaattggtttacttgaatcagcatgattcttgatcattttagaaa 48629155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 48653205 - 48653409
Alignment:
Q  1 taaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaacagaaggaa 100  Q
    |||||||||||||||| ||||||| ||   | |||||||| |||||| ||||||| ||| | |||||| | ||| | |  |||| |||||||||||||||    
T  48653205 taaggttcttcatttgaagggaaacgtaccagtttgtggaaatagttgtagtaagcggtaagaacagcggtggattgaacccataataaaacagaaggaa 48653304  T
Q  101 tattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagcatgattcttgataatttg 200  Q
    ||   ||||||| ||| |||||||||||||| ||         ||| ||||||| |||||||| |||||||||| | ||||||||||||||||| |||||    
T  48653305 taccatgttcatcagctacatcacaaacccaaggaagaaagggattatttatgagacatgaaattggtttgtttgactcagcatgattcttgatcatttg 48653404  T
Q  201 agaaa 205  Q
    |||||    
T  48653405 agaaa 48653409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 81 - 203
Target Start/End: Original strand, 11547396 - 11547518
Alignment:
Q  81 ccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatca 180  Q
    |||| |||||||||||||||||   ||||||| ||| |||||||||||||| ||         ||||||||||||||| |||| |||||||||| | |||    
T  11547396 ccataataaaacagaaggaataccatgttcatgagctacatcacaaacccaaggaacaaaaggattgtttatgatacaagaaattggtttgtttgactca 11547495  T
Q  181 gcatgattcttgataatttgaga 203  Q
     ||||||||||||| ||||||||    
T  11547496 acatgattcttgatcatttgaga 11547518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 205
Target Start/End: Complemental strand, 19665565 - 19665402
Alignment:
Q  42 atagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnn 141  Q
    ||||||||||||||  ||||||||||||| ||| | | ||||| | ||| ||||||||||||  |||| |  ||| |||||||||||||||||           
T  19665565 atagttatagtaagcagtgaaaacagcagtggattgaatccataacaaagcagaaggaatatcatgttgagaagctacatcacaaacccatggaagaaaa 19665466  T
Q  142 taattgtttatgatacatgaaaatggtttgtttaaatcagcatgattcttgataatttgagaaa 205  Q
      |||||||||||| || ||||  ||||||||| | |||  ||||||||| || ||||||||||    
T  19665465 ggattgtttatgatgcaagaaataggtttgtttgactcattatgattcttaatcatttgagaaa 19665402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 134
Target Start/End: Original strand, 27228284 - 27228385
Alignment:
Q  33 tttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccat 132  Q
    |||||| | ||||||||||||||  | |||||||||| |||| | | ||||| ||||| |||||||||| | | |||||  ||| ||||||| |||||||    
T  27228284 tttgtgaaaatagttatagtaagctgcgaaaacagcaccggattgaatccataataaagcagaaggaatctcgagttcagcagctacatcactaacccat 27228383  T
Q  133 gg 134  Q
    ||    
T  27228384 gg 27228385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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