View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902_low_4 (Length: 602)

Name: NF8902_low_4
Description: NF8902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902_low_4
NF8902_low_4
[»] chr7 (10 HSPs)
chr7 (268-588)||(39605215-39605535)
chr7 (46-186)||(39604914-39605056)
chr7 (224-330)||(39605094-39605200)
chr7 (476-585)||(46857259-46857365)
chr7 (476-585)||(23846668-23846774)
chr7 (503-588)||(7194347-7194429)
chr7 (1-48)||(39601534-39601584)
chr7 (497-573)||(18995715-18995788)
chr7 (133-186)||(39606810-39606864)
chr7 (535-588)||(24056003-24056056)
[»] chr8 (1 HSPs)
chr8 (350-585)||(34967263-34967485)
[»] chr2 (3 HSPs)
chr2 (341-585)||(20125232-20125464)
chr2 (498-573)||(42757383-42757455)
chr2 (537-573)||(37787497-37787533)
[»] chr3 (3 HSPs)
chr3 (438-585)||(3330976-3331120)
chr3 (497-588)||(15819564-15819652)
chr3 (535-573)||(37979107-37979145)
[»] chr1 (3 HSPs)
chr1 (403-532)||(33473179-33473308)
chr1 (535-573)||(25647078-25647116)
chr1 (509-572)||(32907583-32907642)
[»] scaffold0044 (1 HSPs)
scaffold0044 (476-584)||(21647-21752)
[»] chr5 (2 HSPs)
chr5 (476-585)||(31254146-31254252)
chr5 (509-585)||(11077822-11077895)
[»] chr4 (1 HSPs)
chr4 (509-585)||(8016461-8016534)
[»] scaffold0625 (1 HSPs)
scaffold0625 (497-573)||(868-941)


Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 268 - 588
Target Start/End: Original strand, 39605215 - 39605535
Alignment:
Q  268 caatttaaacaattaaagtatgttccgtcacttgtcaaagactttattttgagtctaatttgatgtctttgtggcatatctttggcggttgtgggttatt 367  Q
    ||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39605215 caatttaaacaattaaaatatgttctgacacatgtcaaagactttattttgagtctaatttgatgtctttgtggcatatctttggcggttgtgggttatt 39605314  T
Q  368 tttgacggattttcatatgtctgggctcgaattggtgttggttctcgaaagggcatttctcaatttcataccacttttgtgttgtcattgtgtgtatcac 467  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39605315 tttgacggattttcatatgtctgggcttgaattggtgttggttctcgaaagggcgtttctcaatttcataccacttttgtgttgtcattgtgtgtatcac 39605414  T
Q  468 ttgttagggtttgtttcggtggtttgataccctcagtgttatattgttcctccaagatcatggatattgtgcttcgtaacaagtcttataggctagaaat 567  Q
     |||||||||||||||||||||||||| ||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39605415 ctgttagggtttgtttcggtggtttgacaccctcaatgttatattgttccctcaagatcatggatattgtgcttcgtaacaagtcttataggctagaaat 39605514  T
Q  568 ggtcatacacttgttgtctgt 588  Q
    |||||||||||||||||||||    
T  39605515 ggtcatacacttgttgtctgt 39605535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 46 - 186
Target Start/End: Original strand, 39604914 - 39605056
Alignment:
Q  46 aaaacccaaaaagagaaa--gaaaataattcaaatttcctcaaaattgaatgaatctttatgttttgtcactttcatcttcttctaaattaaactctaaa 143  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39604914 aaaacccaaaaagagaaaaagaaaataattcaaatttcctcaaaattgaatgaatctttatgttttgtcactttcatcttcttctaaattaaactctaaa 39605013  T
Q  144 atcaaagtccaaattctcattgaactctaaatttatcaaacct 186  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  39605014 atcaaaggccaaattctcattgaactctaaatttatcaaacct 39605056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 224 - 330
Target Start/End: Original strand, 39605094 - 39605200
Alignment:
Q  224 ctgaacaattaaagtatctagattttacttaaataggttagatgcaatttaaacaattaaagtatgttccgtcacttgtcaaagactttattttgagtct 323  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39605094 ctgaacaattaaagtatctagattttacttaaataggttaggtgcaatttaaacaattaaagtatgttccgtcatttgtcaaagactttattttgagtct 39605193  T
Q  324 aatttga 330  Q
    |||||||    
T  39605194 aatttga 39605200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 476 - 585
Target Start/End: Original strand, 46857259 - 46857365
Alignment:
Q  476 gtttgtttcggtggtttgataccctcagtgttatattgttcctccaagatcatggatattgtgcttcgtaacaagtcttataggctagaaatggtcatac 575  Q
    |||||||||||||||||| ||||||||| ||| ||||| |||||||||||||| || |||   |||||||||| ||||| |||||||||||||||||| |    
T  46857259 gtttgtttcggtggtttggtaccctcagcgttgtattgctcctccaagatcatagacatt---cttcgtaacaggtcttctaggctagaaatggtcatgc 46857355  T
Q  576 acttgttgtc 585  Q
    ||||||||||    
T  46857356 acttgttgtc 46857365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 476 - 585
Target Start/End: Complemental strand, 23846774 - 23846668
Alignment:
Q  476 gtttgtttcggtggtttgataccctcagtgttatattgttcctccaagatcatggatattgtgcttcgtaacaagtcttataggctagaaatggtcatac 575  Q
    |||||||||||||||||| ||||||||| ||| ||||| |||||||||||||| || |||   |||||||||| ||||| ||| |||||||||||||| |    
T  23846774 gtttgtttcggtggtttggtaccctcagcgttgtattgctcctccaagatcatagacatt---cttcgtaacaggtcttctagtctagaaatggtcatgc 23846678  T
Q  576 acttgttgtc 585  Q
    ||||||||||    
T  23846677 acttgttgtc 23846668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 503 - 588
Target Start/End: Complemental strand, 7194429 - 7194347
Alignment:
Q  503 gtgttatattgttcctccaagatcatggatattgtgcttcgtaacaagtcttataggctagaaatggtcatacacttgttgtctgt 588  Q
    ||||| ||||| ||||||||||||||||||   |||||||||||||| |||| ||||||||||||||||||  || ||||||||||    
T  7194429 gtgttgtattggtcctccaagatcatggat---gtgcttcgtaacaaatcttctaggctagaaatggtcatgtacctgttgtctgt 7194347  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 39601534 - 39601584
Alignment:
Q  1 cttcattcttaactttatcatc---tttatcatgttcgtaatcttcctaaa 48  Q
    ||||||||||||||||||||||   |||||||||||||| |||||||||||    
T  39601534 cttcattcttaactttatcatctaatttatcatgttcgtcatcttcctaaa 39601584  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 497 - 573
Target Start/End: Complemental strand, 18995788 - 18995715
Alignment:
Q  497 ccctcagtgttatattgttcctccaagatcatggatattgtgcttcgtaacaagtcttataggctagaaatggtcat 573  Q
    ||||||||||| ||||  |||||||||||||||||   |||||||| ||| | || || ||||||||||||||||||    
T  18995788 ccctcagtgttgtattactcctccaagatcatgga---tgtgcttcttaataggttttctaggctagaaatggtcat 18995715  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 39606864 - 39606810
Alignment:
Q  133 taaactctaaaatcaaagt-ccaaattctcattgaactctaaatttatcaaacct 186  Q
    ||||||| ||||||||||| ||||||||||||| |||| ||||||| ||||||||    
T  39606864 taaactccaaaatcaaagttccaaattctcattaaactataaatttgtcaaacct 39606810  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 588
Target Start/End: Original strand, 24056003 - 24056056
Alignment:
Q  535 tgtgcttcgtaacaagtcttataggctagaaatggtcatacacttgttgtctgt 588  Q
    |||| ||||||||| ||||| ||||||||||||||||||  || ||||||||||    
T  24056003 tgtgattcgtaacaggtcttctaggctagaaatggtcatttacctgttgtctgt 24056056  T

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Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 350 - 585
Target Start/End: Original strand, 34967263 - 34967485
Alignment:
Q  350 tggcggttgtgggttatttttgacggattttcatatgtctgggctcgaattggtgttggttctcgaaagggcatttctcaatttcataccacttttgtgt 449  Q
    ||||||||||||||| |||||||||||||||| |||||||| ||| | |||||||||||||||| ||||||| ||||        |||||||||||||||    
T  34967263 tggcggttgtgggttctttttgacggattttcgtatgtctgtgcttggattggtgttggttctcaaaagggcgtttc--------ataccacttttgtgt 34967354  T
Q  450 tgtcattgtgtgtatcacttgttagggtttgtttcggtggtttgataccctcagtgttatattgttcctccaagatcatggatattgtgcttcgtaacaa 549  Q
    ||| || ||||  ||||  ||||||||||||||| |||||||||  ||||||| |||| ||||| ||||||||||| |||||   | ||||||||||||     
T  34967355 tgttatcgtgt--atcatctgttagggtttgttttggtggtttggcaccctcaatgttgtattgctcctccaagataatgga---tttgcttcgtaacag 34967449  T
Q  550 gtcttataggctagaaatggtcatacacttgttgtc 585  Q
    ||||| |||||||||||||||||| ||| |||||||    
T  34967450 gtcttctaggctagaaatggtcatgcacatgttgtc 34967485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 341 - 585
Target Start/End: Original strand, 20125232 - 20125464
Alignment:
Q  341 gcatatctttggcggttgtgggttatttttgacggattttcatatgtctgggctcgaattggtgttggttctcgaaagggcatttctcaatttcatacca 440  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||| ||| | ||  |||||||||||| ||||||| || |        ||||||    
T  20125232 gcatatctttggcggttgtgggttctttttgacggattttcttatgtctgagcttggatatgtgttggttctcaaaagggcgttcc--------atacca 20125323  T
Q  441 cttttgtgttgtcattgtgtgtatcacttgttagggtttgtttcggtggtttgataccctcagtgttatattgttcctccaagatcatggatattgtgct 540  Q
    |||||||||||| || ||||||||||   | ||||||||||||| ||||||||  |||||||||||| ||||| |||||||| || |||||   ||||||    
T  20125324 cttttgtgttgttatcgtgtgtatcatccgatagggtttgtttcagtggtttggcaccctcagtgttgtattgctcctccaaaat-atgga---tgtgct 20125419  T
Q  541 tcgtaacaagtcttataggctagaaatggtcatacacttgttgtc 585  Q
    ||  |||| ||||| ||||||||||||||||||  ||||||||||    
T  20125420 tcacaacaggtcttttaggctagaaatggtcatgtacttgttgtc 20125464  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 498 - 573
Target Start/End: Original strand, 42757383 - 42757455
Alignment:
Q  498 cctcagtgttatattgttcctccaagatcatggatattgtgcttcgtaacaagtcttataggctagaaatggtcat 573  Q
    |||||||||| ||||| | |||||||||||||||   ||||||| |||||| ||||| |||| |||||||||||||    
T  42757383 cctcagtgttgtattgctactccaagatcatgga---tgtgctttgtaacaggtcttctaggttagaaatggtcat 42757455  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 537 - 573
Target Start/End: Complemental strand, 37787533 - 37787497
Alignment:
Q  537 tgcttcgtaacaagtcttataggctagaaatggtcat 573  Q
    |||||||||||||||||| ||||||||||||||||||    
T  37787533 tgcttcgtaacaagtcttctaggctagaaatggtcat 37787497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 438 - 585
Target Start/End: Complemental strand, 3331120 - 3330976
Alignment:
Q  438 ccacttttgtgttgtcattgtgtgtatcacttgttagggtttgtttcggtggtttgataccctcagtgttatattgttcctccaagatcatggatattgt 537  Q
    |||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||  |||||| | ||| ||||| |||||||||||||| || |   |    
T  3331120 ccacttgtgtgttgttattgtgtgtatcactcgttagggtttgtttcggtggtttggcaccctcggcgttgtattgctcctccaagatcatagaca---t 3331024  T
Q  538 gcttcgtaacaagtcttataggctagaaatggtcatacacttgttgtc 585  Q
    ||||||||| | ||||| |||||||||||||||||| |||||||||||    
T  3331023 gcttcgtaataggtcttctaggctagaaatggtcatgcacttgttgtc 3330976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 497 - 588
Target Start/End: Original strand, 15819564 - 15819652
Alignment:
Q  497 ccctcagtgttatattgttcctccaagatcatggatattgtgcttcgtaacaagtcttataggctagaaatggtcatacacttgttgtctgt 588  Q
    ||||||||||| || || |||||||||||||||||    ||||||||||||| ||| | ||||||||||||||||||  || ||||||||||    
T  15819564 ccctcagtgttgtactgctcctccaagatcatggac---gtgcttcgtaacaggtcatctaggctagaaatggtcatgtacctgttgtctgt 15819652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 535 - 573
Target Start/End: Complemental strand, 37979145 - 37979107
Alignment:
Q  535 tgtgcttcgtaacaagtcttataggctagaaatggtcat 573  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  37979145 tgtgcttcgtaacaggtcttctaggctagaaatggtcat 37979107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 403 - 532
Target Start/End: Original strand, 33473179 - 33473308
Alignment:
Q  403 tgttggttctcgaaagggcatttctcaatttcataccacttttgtgttgtcattgtgtgtatcacttgttagggtttgtttcggtggtttgataccctca 502  Q
    ||||||||||||||||||  |||||||||||| || |||||||||||||| || |||||||||||  ||||||||||||||| ||||||||  |||||||    
T  33473179 tgttggttctcgaaagggagtttctcaatttcgtatcacttttgtgttgttatcgtgtgtatcacccgttagggtttgtttcagtggtttggcaccctca 33473278  T
Q  503 gtgttatattgttcctccaagatcatggat 532  Q
    |  || ||||| |  ||||| |||||||||    
T  33473279 ggattttattgcttgtccaaaatcatggat 33473308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 535 - 573
Target Start/End: Complemental strand, 25647116 - 25647078
Alignment:
Q  535 tgtgcttcgtaacaagtcttataggctagaaatggtcat 573  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  25647116 tgtgcttcgtaacaagtcttctaggctagaaatggtcat 25647078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 572
Target Start/End: Original strand, 32907583 - 32907642
Alignment:
Q  509 tattgttcctccaagatcatggatattgtgcttcgtaacaagtcttataggctagaaatggtca 572  Q
    ||||| |||||||||||||||     |||||||||||||| ||||| |||||||||||||||||    
T  32907583 tattgctcctccaagatcatga----tgtgcttcgtaacaggtcttctaggctagaaatggtca 32907642  T

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Target: scaffold0044 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 476 - 584
Target Start/End: Original strand, 21647 - 21752
Alignment:
Q  476 gtttgtttcggtggtttgataccctcagtgttatattgttcctccaagatcatggatattgtgcttcgtaacaagtcttataggctagaaatggtcatac 575  Q
    |||||||||||||||||| ||| ||||| ||| ||||| ||||||||||||||  | |||   |||||||||| ||||| |||||||||||||||||| |    
T  21647 gtttgtttcggtggtttggtactctcagcgttgtattgctcctccaagatcataaacatt---cttcgtaacaggtcttctaggctagaaatggtcatgc 21743  T
Q  576 acttgttgt 584  Q
    |||||||||    
T  21744 acttgttgt 21752  T

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Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 476 - 585
Target Start/End: Complemental strand, 31254252 - 31254146
Alignment:
Q  476 gtttgtttcggtggtttgataccctcagtgttatattgttcctccaagatcatggatattgtgcttcgtaacaagtcttataggctagaaatggtcatac 575  Q
    |||||||||||||||||| ||||||||  ||| ||||| |||||||||||||| || |||   |||||||||| ||||| |||| ||||||||||||| |    
T  31254252 gtttgtttcggtggtttggtaccctcaacgttgtattgctcctccaagatcatagacatt---cttcgtaacaggtcttctagggtagaaatggtcatgc 31254156  T
Q  576 acttgttgtc 585  Q
    |||| |||||    
T  31254155 acttattgtc 31254146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 509 - 585
Target Start/End: Complemental strand, 11077895 - 11077822
Alignment:
Q  509 tattgttcctccaagatcatggatattgtgcttcgtaacaagtcttataggctagaaatggtcatacacttgttgtc 585  Q
    ||||| |||||||||||||| || ||   ||||||||||| ||||| |||| ||||||||||||| |||||||||||    
T  11077895 tattgctcctccaagatcatagacat---gcttcgtaacaggtcttctaggttagaaatggtcatgcacttgttgtc 11077822  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 509 - 585
Target Start/End: Complemental strand, 8016534 - 8016461
Alignment:
Q  509 tattgttcctccaagatcatggatattgtgcttcgtaacaagtcttataggctagaaatggtcatacacttgttgtc 585  Q
    ||||| ||||||||||||||||||   ||||||| ||||| ||||| ||||||||||||||||||  ||||||||||    
T  8016534 tattgctcctccaagatcatggat---gtgcttcataacaggtcttctaggctagaaatggtcatgtacttgttgtc 8016461  T

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Target: scaffold0625 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 497 - 573
Target Start/End: Original strand, 868 - 941
Alignment:
Q  497 ccctcagtgttatattgttcctccaagatcatggatattgtgcttcgtaacaagtcttataggctagaaatggtcat 573  Q
    ||||||||||| ||||  |||||||||||||||||   |||||||| ||| | || || ||||||||||||||||||    
T  868 ccctcagtgttgtattactcctccaagatcatgga---tgtgcttcttaataggttttctaggctagaaatggtcat 941  T

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