View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8902_low_41 (Length: 268)
Name: NF8902_low_41
Description: NF8902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902_low_41 |
 | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
| [»] scaffold0011 (1 HSPs) |
| | |
|
| [»] scaffold0577 (1 HSPs) |
| | |
|
| [»] scaffold0570 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 9611648 - 9611869
Alignment:
| Q |
12 |
cagcacagatgataaataaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccga |
111 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9611648 |
cagcacaaatgataaataaataaggtgagagaggatccccttgacggagtccgcgtcctggcacaataggacccactgaagctccattaaccaaaaccga |
9611747 |
T |
|
| Q |
112 |
gtaatcaactgtctcaacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctg |
211 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9611748 |
gtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaacccatttgaatcatgatttctcgtaggtaatcccaatctaatctg |
9611847 |
T |
|
| Q |
212 |
tcatatgctttactgatgtcca |
233 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
9611848 |
tcatatgctttactaatgtcca |
9611869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 27454638 - 27454840
Alignment:
| Q |
20 |
atgataaataaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagtaatcaa |
119 |
Q |
| |
|
||||| || ||||||||||| || ||||| || ||||| ||||| | ||||| |||||||||||||| | |||||||||||||| ||||||||||||| |
|
|
| T |
27454638 |
atgatgaacaaataaggtgaaaggggatcaccctgacgaaggccacaccctggtacaataggacccaccgatgctccattaaccaagaccgagtaatcaa |
27454737 |
T |
|
| Q |
120 |
ctgtctcaacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctgtcatatgc |
219 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||| || |||||||| ||||||||||||| ||| ||||| || |
|
|
| T |
27454738 |
ccgtctcaacacaaagcataatccagttaacccatcgagatgagaaacccatttgaatcatgatatctcgtagataatcccaatctagtctatcataagc |
27454837 |
T |
|
| Q |
220 |
ttt |
222 |
Q |
| |
|
||| |
|
|
| T |
27454838 |
ttt |
27454840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 14492754 - 14492881
Alignment:
| Q |
98 |
ttaaccaaaaccgagtaatcaactgtctcaacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaat |
197 |
Q |
| |
|
||||||||||| || || || | |||||||||||| | |||||||||||| || || ||||| |||| |||||||| ||||||| || | | ||| | |
|
|
| T |
14492754 |
ttaaccaaaacggaatagtctattgtctcaacacataacataatccaactgacacaacgagattaaaatcccatttgcatcataacatcacacaagtatt |
14492853 |
T |
|
| Q |
198 |
cccaatctaatctgtcatatgctttact |
225 |
Q |
| |
|
|||| ||||| |||||||||| |||||| |
|
|
| T |
14492854 |
cccagtctaacctgtcatatggtttact |
14492881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 26431339 - 26431560
Alignment:
| Q |
12 |
cagcacagatgataaataaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccga |
111 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26431339 |
cagcacaaatgataaataaataaggtgagagaggatccccttgacggagtccgcgtcctggcacaataggacccactgaagctccattaaccaaaaccga |
26431438 |
T |
|
| Q |
112 |
gtaatcaactgtctcaacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctg |
211 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
26431439 |
gtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaactcatttgaatcatgatttcttgtaggtaatcccaatctaatctg |
26431538 |
T |
|
| Q |
212 |
tcatatgctttactgatgtcca |
233 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
26431539 |
tcatatgctttactaatgtcca |
26431560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 15 - 233
Target Start/End: Complemental strand, 48444657 - 48444439
Alignment:
| Q |
15 |
cacagatgataaataaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagta |
114 |
Q |
| |
|
|||| ||||| |||||||||||||| || ||||| || ||||| |||||||| ||||| ||||||||| |||||| |||||||||||||| || || || |
|
|
| T |
48444657 |
cacaaatgatgaataaataaggtgaaaggggatcaccctgacgaaggccgcgccctggtacaataggatccactagtgctccattaaccaagactgaata |
48444558 |
T |
|
| Q |
115 |
atcaactgtctcaacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctgtca |
214 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||| ||||| || |||||||||| |||||| || |||||||| || |||||||||| ||| ||| |
|
|
| T |
48444557 |
gtcaaccgtctcaacacaaagcataatccagctaacccaacgagatgagaaacccatttaaatcatgatatctcgtagatagtcccaatctagtctatca |
48444458 |
T |
|
| Q |
215 |
tatgctttactgatgtcca |
233 |
Q |
| |
|
|| |||||||| ||||||| |
|
|
| T |
48444457 |
taagctttactaatgtcca |
48444439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 2542653 - 2542443
Alignment:
| Q |
15 |
cacagatgataaataaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagta |
114 |
Q |
| |
|
|||||||| | |||| |||||||||||| ||||| || |||| ||||| || | |||||||||||||||||| |||||||| ||||| |||||||| |
|
|
| T |
2542653 |
cacagatgttgaatagataaggtgagaggggatcaccctgacaaaggccacgccttggcacaataggacccaccgttgctccattgaccaagaccgagta |
2542554 |
T |
|
| Q |
115 |
atcaactgtctcaacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctgtca |
214 |
Q |
| |
|
||||| || ||||| ||||| ||||||||||||||||| || || ||||||||||||||||| || ||||| ||| |||||||||||||| | ||| |
|
|
| T |
2542553 |
gtcaaccgtttcaacgtaaagcgtaatccaactaacccattcggaggagaaacccatttgaatcatgatatctcgaaggaaatcccaatctaatatatca |
2542454 |
T |
|
| Q |
215 |
tatgctttact |
225 |
Q |
| |
|
|| |||||||| |
|
|
| T |
2542453 |
taagctttact |
2542443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 13962974 - 13962881
Alignment:
| Q |
20 |
atgataaataaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagt |
113 |
Q |
| |
|
||||| || ||||||||||| || ||||| || | ||| |||||||| ||||||||||||||||||| | | |||||||||||||| ||||||| |
|
|
| T |
13962974 |
atgatgaacaaataaggtgaaaggggatcaccctaacgaaggccgcgccctggcacaataggacccattgatgctccattaaccaagaccgagt |
13962881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 36482996 - 36483064
Alignment:
| Q |
112 |
gtaatcaactgtctcaacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcat |
180 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||| || |||||||||||| |||||||| |
|
|
| T |
36482996 |
gtaatcaactgtctcaacacatagcataatccattgaacccatctagtagaaaaacccatctgaatcat |
36483064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 32955431 - 32955218
Alignment:
| Q |
12 |
cagcacagatgataaataaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccga |
111 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| | |||||||||||||| ||||| |
|
|
| T |
32955431 |
cagcacaaatgataaataaataaggtgagagaggatccccttgacggagaccgcgtcctagcacaataggacccactgatgctccattaaccaacaccga |
32955332 |
T |
|
| Q |
112 |
gtaatcaactgtctcaacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctg |
211 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32955331 |
gtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaacccatttgaatcatgatttctcgtaggtaatcccaatctaatctg |
32955232 |
T |
|
| Q |
212 |
tcatatgctttact |
225 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
32955231 |
tcatatgctttact |
32955218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 30 - 233
Target Start/End: Complemental strand, 7606169 - 7605966
Alignment:
| Q |
30 |
aataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagtaatcaactgtctcaac |
129 |
Q |
| |
|
|||||||||| || ||||| || ||||| ||| |||| ||||| |||||||||||| | | |||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
7606169 |
aataaggtgaaaggggatcaccctgacgaaggtcgcgccctggtacaataggaccctttgatgctccattaaccaagaccgagtaatcaaccgtctcaac |
7606070 |
T |
|
| Q |
130 |
acaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctgtcatatgctttactgatg |
229 |
Q |
| |
|
|||||||||||| || |||||||||||||| || ||||||||||||||||| || |||||||| ||||||||||||| ||| ||||| |||||||| ||| |
|
|
| T |
7606069 |
acaaagcataattcagctaacccatcgagatgagaaacccatttgaatcatgatatctcgtagataatcccaatctagtctatcataagctttactaatg |
7605970 |
T |
|
| Q |
230 |
tcca |
233 |
Q |
| |
|
|||| |
|
|
| T |
7605969 |
tcca |
7605966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 183
Target Start/End: Complemental strand, 328122 - 328051
Alignment:
| Q |
112 |
gtaatcaactgtctcaacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataat |
183 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| |||||||| || |||||||||||| ||||||||||| |
|
|
| T |
328122 |
gtaatcaactgtctcaacgcatagcataatccactgaacccatctagcagaaaaacccatctgaatcataat |
328051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 3964448 - 3964661
Alignment:
| Q |
20 |
atgataaataaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagtaatcaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| | | |||||||||||||| || |||||||||| |
|
|
| T |
3964448 |
atgataaataaataaggtgagagaggatccccttgacggagtccgcgtccttgcacaataggacccattgatgctccattaaccaatactgagtaatcaa |
3964547 |
T |
|
| Q |
120 |
ctgtctcaacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctgtcatatgc |
219 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3964548 |
ccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaacccatttgaatcatgatttctcgtaggtaatcccaatctaatctgtcatatgc |
3964647 |
T |
|
| Q |
220 |
tttactgatgtcca |
233 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
3964648 |
tttactaatgtcca |
3964661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 24018522 - 24018433
Alignment:
| Q |
94 |
tccattaaccaaaaccgagtaatcaactgtctcaacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataat |
183 |
Q |
| |
|
||||||||||| |||| | || || || ||||||||||| | ||||||| |||||||||| | ||| ||||| ||| |||||| |||||| |
|
|
| T |
24018522 |
tccattaaccagaacctaatagtctaccgtctcaacacataacataatcaaactaacccaacaagatgaaaatcccttttgaaccataat |
24018433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 15 - 233
Target Start/End: Complemental strand, 10998024 - 10997805
Alignment:
| Q |
15 |
cacagatgataaataaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagta |
114 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||| |
|
|
| T |
10998024 |
cacaaatgataaataaataaggtgagagaggatccccctgacggaggccgcgtcctggcacaataggacccactgatgctccattaaccaaaatcgagta |
10997925 |
T |
|
| Q |
115 |
atcaactgtctcaacacaaagcataatccaactaacccatcgaga-agaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctgtc |
213 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
10997924 |
atcaaccgtctcaacacaaagcataatccaactaacccatcgagataaaaaatcccatttgaatcatgatttctcgtaggtaatcccaatctaatctatc |
10997825 |
T |
|
| Q |
214 |
atatgctttactgatgtcca |
233 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
10997824 |
atatgctttactaatgtcca |
10997805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 32284914 - 32285132
Alignment:
| Q |
15 |
cacagatgataaataaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagta |
114 |
Q |
| |
|
|||| ||||| || ||||||||||| |||||||| || ||||| ||||| || ||||| |||||||||||||| | |||||||||||||| |||||||| |
|
|
| T |
32284914 |
cacaaatgatgaacaaataaggtgaaagaggatcaccctgacgaaggccacgccctggtacaataggacccaccgatgctccattaaccaagaccgagta |
32285013 |
T |
|
| Q |
115 |
atcaactgtctcaacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctgtca |
214 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| || ||||| | ||||||||| ||||||||||| ||||||||||||| | | ||| |
|
|
| T |
32285014 |
atcaaccgtctcaacacaaagcataatccaactaacccatcgagatgagaaacctaattgaatcatgatttctcgtagataatcccaatctagtatatca |
32285113 |
T |
|
| Q |
215 |
tatgctttactgatgtcca |
233 |
Q |
| |
|
|| |||||||| ||||||| |
|
|
| T |
32285114 |
taagctttactaatgtcca |
32285132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 68 - 225
Target Start/End: Complemental strand, 26706187 - 26706030
Alignment:
| Q |
68 |
cctggcacaataggacccactaaagctccattaaccaaaaccgagtaatcaactgtctcaacacaaagcataatccaactaacccatcgagaagaaaaac |
167 |
Q |
| |
|
||||| ||||||| |||||| | ||| |||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||||| || |||| |
|
|
| T |
26706187 |
cctggtacaatagaacccaccgatgctgcattaaccaagacggagtaatcaaccgtctcaacacaaagcataatccagctaacccatcgagatgagaaac |
26706088 |
T |
|
| Q |
168 |
ccatttgaatcataatttctcgtaggtaatcccaatctaatctgtcatatgctttact |
225 |
Q |
| |
|
||||||||||||| || ||| |||| || ||||||||||| || ||||| |||||||| |
|
|
| T |
26706087 |
ccatttgaatcatgatatcttgtagatagtcccaatctaacctatcataagctttact |
26706030 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 46092662 - 46092883
Alignment:
| Q |
12 |
cagcacagatgataaataaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccga |
111 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||| | ||||||||||| ||||| || |
|
|
| T |
46092662 |
cagcacaaatgataaataaataaggtgagagaggatctccctgacggaggccgcgtcctggaacaataggacccactgatgctccattaacaaaaactga |
46092761 |
T |
|
| Q |
112 |
gtaatcaactgtctcaacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctg |
211 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
46092762 |
gtaatcaaccgtctcaacacaaaacataatccaactaacccatcaagatgaaaaacccatttgaatcatgattcctcgtaggtaatcccaatctaatcta |
46092861 |
T |
|
| Q |
212 |
tcatatgctttactgatgtcca |
233 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
46092862 |
tcatatgctttactaatgtcca |
46092883 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 231
Target Start/End: Original strand, 45276466 - 45276602
Alignment:
| Q |
95 |
ccattaaccaaaaccgagtaatcaactgtctcaacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggt |
194 |
Q |
| |
|
||||| |||||||| | |||||| || ||||||||||||||||||||||| | || ||| ||||| | ||| |||||||| || || || || | |
|
|
| T |
45276466 |
ccattgaccaaaactgtgtaatcgacggtctcaacacaaagcataatccatcgaatccacttctctgaaaatctcatctgaatcattatatcacggagat |
45276565 |
T |
|
| Q |
195 |
aatcccaatctaatctgtcatatgctttactgatgtc |
231 |
Q |
| |
|
| |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
45276566 |
actcccaatctaatctgtcataagctttgctgatgtc |
45276602 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 31 - 225
Target Start/End: Complemental strand, 10211269 - 10211075
Alignment:
| Q |
31 |
ataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagtaatcaactgtctcaaca |
130 |
Q |
| |
|
||||||||| |||||||| |||||||| ||| |||| |||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10211269 |
ataaggtgaaagaggatcaccttgacgaaggtcgcgccctggcacaataggacccaccgatgctccattaaccaagaccgagtaatcaactgtctcaaca |
10211170 |
T |
|
| Q |
131 |
caaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctgtcatatgctttact |
225 |
Q |
| |
|
||||||||||||||||||||||||| ||| || |||||||||||| |||| || ||||| ||||||||||| |||||||| ||||| |||||||| |
|
|
| T |
10211169 |
caaagcataatccaactaacccatctagaggagaaacccatttgagtcatgatatctcgaaggtaatcccagtctaatctatcataagctttact |
10211075 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 23771970 - 23772188
Alignment:
| Q |
15 |
cacagatgataaataaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagta |
114 |
Q |
| |
|
|||| ||||| |||||||||||||| | ||||| || ||||| |||| || ||||| |||||||||| |||| ||||| |||||| | || || || |
|
|
| T |
23771970 |
cacaaatgatgaataaataaggtgaaatgggatcaccctgacgaaggctgcaccctggtacaataggacacactggtgctccgttaacctagactgaata |
23772069 |
T |
|
| Q |
115 |
atcaactgtctcaacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctgtca |
214 |
Q |
| |
|
|||| | |||||||||||||||||||| || |||||||||||||| || ||||||||||||||||| || |||||||| ||||||||||||| ||| ||| |
|
|
| T |
23772070 |
atcatccgtctcaacacaaagcataatacagctaacccatcgagatgagaaacccatttgaatcatgatatctcgtagataatcccaatctagtctatca |
23772169 |
T |
|
| Q |
215 |
tatgctttactgatgtcca |
233 |
Q |
| |
|
|| |||||||| ||||||| |
|
|
| T |
23772170 |
taagctttactaatgtcca |
23772188 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 139
Target Start/End: Complemental strand, 27175711 - 27175607
Alignment:
| Q |
35 |
ggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagtaatcaactgtctcaacacaaa |
134 |
Q |
| |
|
||||| || ||||||| ||||| ||||| |||||||||| ||||||||| || | | |||||||||||| |||||||| || | ||||||||||||| |
|
|
| T |
27175711 |
ggtgaaaggggatccctctgacgaaggccacgtcctggcataataggacctacatatgttccattaaccaagaccgagtagtctatggtctcaacacaaa |
27175612 |
T |
|
| Q |
135 |
gcata |
139 |
Q |
| |
|
||||| |
|
|
| T |
27175611 |
gcata |
27175607 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 51194021 - 51194239
Alignment:
| Q |
15 |
cacagatgataaataaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagta |
114 |
Q |
| |
|
|||| ||||| || ||||||||||| |||||||| |||||||| ||| |||| ||||| |||||||||||||| | |||| ||||||||| | |||||| |
|
|
| T |
51194021 |
cacaaatgatgaacaaataaggtgaaagaggatcaccttgacgaaggtcgcgccctggtacaataggacccaccgatgctctattaaccaagatcgagta |
51194120 |
T |
|
| Q |
115 |
atcaactgtctcaacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctgtca |
214 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| || |||||||| |||| |||||||| ||| ||| |
|
|
| T |
51194121 |
atcaattgtctcaacacaaagcataatccaactaaccgatcgagatgagaaacccatttgaatcatgatatctcgtagataattccaatctagtctatca |
51194220 |
T |
|
| Q |
215 |
tatgctttactgatgtcca |
233 |
Q |
| |
|
|| |||||||| ||||||| |
|
|
| T |
51194221 |
taagctttactaatgtcca |
51194239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 21687807 - 21687613
Alignment:
| Q |
15 |
cacagatgataaataaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagta |
114 |
Q |
| |
|
|||||||||| || |||||||||||||||||||| || | | | ||| ||| ||||||||||||||||||||| | |||||||||||||| | |||||| |
|
|
| T |
21687807 |
cacagatgatgaacaaataaggtgagagaggatcaccctaatgaaggtcgcaccctggcacaataggacccactgatgctccattaaccaagatcgagta |
21687708 |
T |
|
| Q |
115 |
atcaactgtctcaacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatc |
209 |
Q |
| |
|
||||| |||||||||||||| |||||| |||||||||||| ||| ||||| |||||||||||||| || ||||||| ||| ||||||||||||| |
|
|
| T |
21687707 |
gtcaaccgtctcaacacaaaggataatctaactaacccatctagaggaaaaccccatttgaatcatgatatctcgtaagtagtcccaatctaatc |
21687613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 8563975 - 8563905
Alignment:
| Q |
14 |
gcacagatgataaataaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacc |
84 |
Q |
| |
|
|||||||| ||||| ||||| || || |||||||||||||||||||| ||||||||||| | ||||||||| |
|
|
| T |
8563975 |
gcacagataataaacaaatagggggacagaggatccccttgacggagaccgcgtcctggaataataggacc |
8563905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 30470862 - 30470911
Alignment:
| Q |
95 |
ccattaaccaaaaccgagtaatcaactgtctcaacacaaagcataatcca |
144 |
Q |
| |
|
||||| |||||||| | |||||| || ||||||||||||||||||||||| |
|
|
| T |
30470862 |
ccattgaccaaaactgtgtaatcgacggtctcaacacaaagcataatcca |
30470911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 10983188 - 10983232
Alignment:
| Q |
184 |
ttctcgtaggtaatcccaatctaatctgtcatatgctttactgat |
228 |
Q |
| |
|
||||||||| || |||||||||| |||||||||||| |||||||| |
|
|
| T |
10983188 |
ttctcgtagatattcccaatctattctgtcatatgccttactgat |
10983232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 214456 - 214235
Alignment:
| Q |
12 |
cagcacagatgataaataaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccga |
111 |
Q |
| |
|
||||||| ||||| || ||||||||||| || ||||| || ||||| |||||| ||||||| | ||||||| |||| | |||||||||||||| ||||| |
|
|
| T |
214456 |
cagcacaaatgatgaacaaataaggtgaaaggggatcaccctgacgaaggccgtgtcctggtagaataggatccaccgatgctccattaaccaagaccga |
214357 |
T |
|
| Q |
112 |
gtaatcaactgtctcaacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctg |
211 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||| ||||||||| || ||||||||||||| ||| || |||||||| ||||||||||||| ||| |
|
|
| T |
214356 |
gtaatcaactgcctcaacacaaagcataatccagctaatccatcgagatgagaaacccatttgaagcatgatatctcgtagataatcccaatctagtcta |
214257 |
T |
|
| Q |
212 |
tcatatgctttactgatgtcca |
233 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
214256 |
tcataagctttactgatgtcca |
214235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 54462 - 54252
Alignment:
| Q |
15 |
cacagatgataaataaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagta |
114 |
Q |
| |
|
|||| ||||| || ||||||||||| || || ||||| ||||| ||||||| ||| | | |||||||||||| || |||||||||||||| |||||||| |
|
|
| T |
54462 |
cacaaatgatgaacaaataaggtgaaagggggtccccctgacgaaggccgcaccctagtaaaataggacccaccaatgctccattaaccaagaccgagta |
54363 |
T |
|
| Q |
115 |
atcaactgtctcaacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctgtca |
214 |
Q |
| |
|
|| ||| ||||||||||||| ||||||||| ||||||||| |||| || ||||||||||||||||| || ||||| || ||||||||||||| ||| ||| |
|
|
| T |
54362 |
attaaccgtctcaacacaaaacataatccagctaacccattgagacgagaaacccatttgaatcatgatatctcgcagataatcccaatctagtctatca |
54263 |
T |
|
| Q |
215 |
tatgctttact |
225 |
Q |
| |
|
|| |||||||| |
|
|
| T |
54262 |
taagctttact |
54252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0577 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0577
Description:
Target: scaffold0577; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 59 - 225
Target Start/End: Original strand, 4382 - 4548
Alignment:
| Q |
59 |
aggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagtaatcaactgtctcaacacaaagcataatccaactaacccatcgag |
158 |
Q |
| |
|
|||||||| ||| ||||||||| |||||| | |||||| ||||||| | |||||||||||| ||||||||| |||||||| |||| | ||||||||||| |
|
|
| T |
4382 |
aggccgcgccctagcacaatagaacccaccgatgctccaataaccaagatcgagtaatcaaccgtctcaacataaagcatagtccagcaaacccatcgag |
4481 |
T |
|
| Q |
159 |
aagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctgtcatatgctttact |
225 |
Q |
| |
|
| || |||||||||||| |||| || |||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
4482 |
aggagaaacccatttgattcatgatatctcgtaggtaatcccaatctaatctatcataagctttact |
4548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0570
Description:
Target: scaffold0570; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 7072 - 7140
Alignment:
| Q |
112 |
gtaatcaactgtctcaacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcat |
180 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||| || |||||||||||| |||||||| |
|
|
| T |
7072 |
gtaatcaactgtctcaacacatagcataatccattgaacccatctagtagaaaaacccatctgaatcat |
7140 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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