View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902_low_42 (Length: 239)
Name: NF8902_low_42
Description: NF8902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 3034477 - 3034277
Alignment:
| Q |
15 |
agaaaaggaatgaacatattgcgaccgaccgcaaagagggaacggcatcgacaaacattcttattaggtaagggcgtgaggaattggttaatattttaat |
114 |
Q |
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| T |
3034477 |
agaaaaggaatgaacatattgcgaccgaccgcaaagagggaacggcatcgacaaacattcttattaggtaagggcatgaggaattggttaatattttaat |
3034378 |
T |
|
| Q |
115 |
aatctcagccgtggtattaaatttcggttgtgatttctttacaatgcaaacctttatattggagtaaaatgtggccaaaatatttgttgtgatgtcgttg |
214 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3034377 |
aatctcagccgtggtattaaattgcggttgtgatttctttacaatgcaaacctttatattggagtaaaatgtggccaaaatatttgctgtgatgtcgttg |
3034278 |
T |
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| Q |
215 |
c |
215 |
Q |
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| |
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| T |
3034277 |
c |
3034277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 3019399 - 3019292
Alignment:
| Q |
15 |
agaaaaggaatgaacatattgcgaccgaccgcaaagagggaacggcatcgacaaacattcttattaggtaagggcgtgaggaattggttaatattttaat |
114 |
Q |
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|||||||||||||||| |||||||||||| || |||||||||||||||||| ||||||||||||||||||||| | | | ||||||||||| ||||||| |
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| T |
3019399 |
agaaaaggaatgaacacattgcgaccgactgcgaagagggaacggcatcgaaaaacattcttattaggtaaggtcataaacaattggttaattttttaat |
3019300 |
T |
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| Q |
115 |
aatctcag |
122 |
Q |
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|||||||| |
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| T |
3019299 |
aatctcag |
3019292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 3009438 - 3009317
Alignment:
| Q |
15 |
agaaaaggaatgaacatattgcgaccgaccgcaaagagggaacggcatcgacaaacattcttattaggtaagggcgtgaggaattggttaatattttaat |
114 |
Q |
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||||||||||||| ||||||||||| ||| | |||||||| | ||||||| ||||||||||||||||||||||| ||| ||||||||||| ||| ||| |
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| T |
3009438 |
agaaaaggaatgagaatattgcgaccaaccacgaagagggagctgcatcgaaaaacattcttattaggtaagggcatgaaaaattggttaatttttgaat |
3009339 |
T |
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| Q |
115 |
aatctcagccgtggtattaaat |
136 |
Q |
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||||||| | ||||| |||||| |
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| T |
3009338 |
aatctcatctgtggttttaaat |
3009317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 20059785 - 20059979
Alignment:
| Q |
15 |
agaaaaggaatgaacatattgcgaccgaccgcaaagagggaacggcatcgacaaacattcttattaggtaagggcgtgaggaattggttaatatttt-aa |
113 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||| |||||| |||| || |
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| T |
20059785 |
agaaaaggaatgaatattttgcgaccgaccgcaaagagggaacgccatcggaaaacattcttattaggtaagggcatgaagaatttgttaattttttcaa |
20059884 |
T |
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| Q |
114 |
taatctcagccgtggtattaaatttcggttgtgatttctttacaatgcaaacctttatattggagtaaaatgtggccaaaatatttgttgtgatgtc |
210 |
Q |
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|||||| ||| |||| || | || ||||||| ||||| ||||| ||||||| ||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
20059885 |
taatct--gccatggtttttatttgcggttgtaatttcattacactgcaaacgtttatattggagtaaaatgtggccaaagttattgttgtgatgtc |
20059979 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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