View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902_low_49 (Length: 218)
Name: NF8902_low_49
Description: NF8902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902_low_49 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 35250073 - 35250256
Alignment:
| Q |
16 |
ggtgttcagataccacacatagattgggagctaataatttaaaggagctaccgtttatcatccgaagatgcttaagaatgatagggatgtagtatccatg |
115 |
Q |
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| T |
35250073 |
ggtgttcaggtaccacacatagattgggagctaataatttaaaggagctaccgtttatcatccgaagatgcttaagaatgataggggtgtagtatccatg |
35250172 |
T |
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| Q |
116 |
tttttcttaatgatatttgaagataataagtcatatcgttgggttcgtttgaactgaaagtgtccaaattgtcaatagagattt |
199 |
Q |
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| T |
35250173 |
tttttcttaatgatatttgaagataataagtcatatcattgggttcgtttgaactaaaagtgtccaaattgtcagtacagattt |
35250256 |
T |
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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 104 - 194
Target Start/End: Original strand, 12805578 - 12805668
Alignment:
| Q |
104 |
gtagtatccatgtttttcttaatgatatttgaagataataagtcatatcgttgggttcgtttgaactgaaagtgtccaaattgtcaataga |
194 |
Q |
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| T |
12805578 |
gtagtatccatgattttttggatggtatctgaagataataatttatatctttgggtttgtttgaactgaaagtgtccaaattgtcagtaga |
12805668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 41730978 - 41730931
Alignment:
| Q |
154 |
ttgggttcgtttgaactgaaagtgtccaaattgtcaatagagattttg |
201 |
Q |
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| T |
41730978 |
ttgggttcgtttcaactgcaagtgtccaaattgtcagtagagattttg |
41730931 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 161
Target Start/End: Original strand, 35670364 - 35670469
Alignment:
| Q |
56 |
aaaggagctaccgtttatcatccgaagatgcttaagaatgatagggatgtagtatccatgtttttcttaatgatatttgaagataataagtcatatcgtt |
155 |
Q |
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| T |
35670364 |
aaaggaactactatttatcatgctgagatgcttaaggatgatgacgatgtagtatccatgtttttatggatggtatctaaagataataagttatatcttt |
35670463 |
T |
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| Q |
156 |
gggttc |
161 |
Q |
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| T |
35670464 |
gggttc |
35670469 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 201
Target Start/End: Original strand, 11680156 - 11680252
Alignment:
| Q |
102 |
atgtagtatccatgtttttcttaatgatatttgaagataataagtcatatcgttgggttcgtttgaactgaaagtgtccaaattgtcaatagagattttg |
201 |
Q |
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| T |
11680156 |
atgtagtatccatgtttttctagatggt---tgaaaataataagatatatctttgagtttgtttgaactacaagtttccaaattgacaatagagattttg |
11680252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 201
Target Start/End: Original strand, 11688435 - 11688531
Alignment:
| Q |
102 |
atgtagtatccatgtttttcttaatgatatttgaagataataagtcatatcgttgggttcgtttgaactgaaagtgtccaaattgtcaatagagattttg |
201 |
Q |
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| T |
11688435 |
atgtagtatccatgtttttctagatggt---tgaaaataataagatatatctttgagtttgtttgaactacaagtttccaaattgacaatagagattttg |
11688531 |
T |
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