View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902_low_52 (Length: 208)

Name: NF8902_low_52
Description: NF8902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902_low_52
NF8902_low_52
[»] chr8 (6 HSPs)
chr8 (101-199)||(32849779-32849873)
chr8 (17-77)||(32849702-32849762)
chr8 (31-71)||(4412891-4412931)
chr8 (32-71)||(4427995-4428034)
chr8 (118-155)||(4413660-4413697)
chr8 (36-77)||(4460614-4460655)


Alignment Details
Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 101 - 199
Target Start/End: Original strand, 32849779 - 32849873
Alignment:
Q  101 tatactagttttaattacctgagtgaaacgaggttagtggaagtgaagagcgatatatagagggagcttgaataattggatatcgctgtaacacgaaac 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||| |||| |||||    
T  32849779 tatactagttttaattacctgagtgaaacgaggttagtggaagtgaagagcg----atagagggagcttgaataattggatatcgctgcaacaggaaac 32849873  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 32849702 - 32849762
Alignment:
Q  17 attaattgtacctctgagactgaggaacaaacaagcaatgttatatcacaattcataaagc 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32849702 attaattgtacctctgagactgaggaacaaacaagcaatgttatatcacaattcataaagc 32849762  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 4412891 - 4412931
Alignment:
Q  31 tgagactgaggaacaaacaagcaatgttatatcacaattca 71  Q
    ||||||||||||||||||||| ||||| |||||||||||||    
T  4412891 tgagactgaggaacaaacaagtaatgtaatatcacaattca 4412931  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 4427995 - 4428034
Alignment:
Q  32 gagactgaggaacaaacaagcaatgttatatcacaattca 71  Q
    |||||||||||||||||||| ||| |||||||||||||||    
T  4427995 gagactgaggaacaaacaagtaatattatatcacaattca 4428034  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 4413660 - 4413697
Alignment:
Q  118 cctgagtgaaacgaggttagtggaagtgaagagcgata 155  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  4413660 cctgagtgaaacgaggttagtgggaatgaagagcgata 4413697  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 4460655 - 4460614
Alignment:
Q  36 ctgaggaacaaacaagcaatgttatatcacaattcataaagc 77  Q
    |||||||||||||||| |||||||||||||||| || |||||    
T  4460655 ctgaggaacaaacaagtaatgttatatcacaatccagaaagc 4460614  T

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