View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902_low_6 (Length: 558)
Name: NF8902_low_6
Description: NF8902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 242 - 541
Target Start/End: Complemental strand, 4306828 - 4306529
Alignment:
| Q |
242 |
cctaaatcaacggaatgaaacaaataatgcaattatgagtaactacatttctgggtatccgagtgcatcatcggtggcttcacgttctcggaatgtatta |
341 |
Q |
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| T |
4306828 |
cctaaatcaacggaatgaaacaaataatgcaattatgagtaactacatttctgggtatccgagtgcatcatcggtggcttcacgttctcggaatgtatta |
4306729 |
T |
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| Q |
342 |
ttcttcttggcatcctcctctgcgaaaacggaggatgaaaaagtgcagagtnnnnnnnnnnnnnnnnnnnnntttgttgatgaaaagggtttcataagaa |
441 |
Q |
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| T |
4306728 |
ttcttcttggcatcctcctctgcgaaaacggaggatgaaaaagtgcagagtagaagaagaaaaagaagaagatttgttgatgaaaagggtttcataagaa |
4306629 |
T |
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| Q |
442 |
caaattagggatttggttacgccaaattgaaggattgaaaattgatttgctggagttgggtaatgatcaattgagcattggattgtgtgaaatcgaaaac |
541 |
Q |
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| T |
4306628 |
caaattagggatttggttacgccaaattgaaggattgaaaattgatttggtggagttgggtaatgatcaattgagcattggattgtgtgaaatcgaaaac |
4306529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 2 - 204
Target Start/End: Complemental strand, 4307060 - 4306859
Alignment:
| Q |
2 |
cgacgtgtcagtgtctgtgcttcaaagatcaacacataccacattcatgcaattcaaccacaaaaacacaaagattacctgttaatatcagcaatcaagg |
101 |
Q |
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| T |
4307060 |
cgacgtgtca-tgtccgtgcttcaaagatcaacacataccacattcatgcaattcaaccacaaaaacacaaagattacctgttaatatcagcaatcaagg |
4306962 |
T |
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| Q |
102 |
gatttgcataaacactagaactaacttccgtttgccatcttaactccaaattcattggacatttcgaattcaccaaagcatcttcatctctaaacaacat |
201 |
Q |
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| T |
4306961 |
gatttgcataaacactagaactaacttccgtttgccatcttaactccaaattcattggacatttcgaattcaccaaagcatcttcatctctaaacaacat |
4306862 |
T |
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| Q |
202 |
aac |
204 |
Q |
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| T |
4306861 |
aac |
4306859 |
T |
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