View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8903_high_24 (Length: 307)

Name: NF8903_high_24
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8903_high_24
NF8903_high_24
[»] chr7 (1 HSPs)
chr7 (1-40)||(12546202-12546241)
[»] chr4 (7 HSPs)
chr4 (1-36)||(44051669-44051704)
chr4 (1-35)||(13244202-13244236)
chr4 (1-35)||(44344647-44344681)
chr4 (1-35)||(53707207-53707241)
chr4 (1-35)||(53910122-53910156)
chr4 (1-38)||(30457446-30457483)
chr4 (1-37)||(8874738-8874774)
[»] scaffold0316 (1 HSPs)
scaffold0316 (1-35)||(19922-19956)
[»] scaffold0116 (1 HSPs)
scaffold0116 (1-35)||(27502-27536)
[»] scaffold0021 (1 HSPs)
scaffold0021 (1-35)||(139068-139102)
[»] scaffold0008 (1 HSPs)
scaffold0008 (1-35)||(28023-28057)
[»] chr8 (1 HSPs)
chr8 (1-35)||(37604846-37604880)
[»] chr6 (1 HSPs)
chr6 (1-35)||(25173086-25173120)
[»] chr3 (2 HSPs)
chr3 (1-35)||(10736408-10736442)
chr3 (1-35)||(50114396-50114430)
[»] chr2 (3 HSPs)
chr2 (1-35)||(460412-460446)
chr2 (1-35)||(23837652-23837686)
chr2 (1-35)||(36893019-36893053)
[»] chr1 (3 HSPs)
chr1 (1-35)||(35052717-35052751)
chr1 (1-42)||(35524741-35524782)
chr1 (1-37)||(5074576-5074612)
[»] scaffold0407 (2 HSPs)
scaffold0407 (4-36)||(507-539)
scaffold0407 (4-36)||(6971-7003)
[»] scaffold0132 (1 HSPs)
scaffold0132 (1-37)||(39070-39106)
[»] scaffold0103 (1 HSPs)
scaffold0103 (3-35)||(31343-31375)
[»] chr5 (3 HSPs)
chr5 (1-37)||(9733181-9733217)
chr5 (1-29)||(24185530-24185558)
chr5 (1-37)||(43446311-43446347)


Alignment Details
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 12546202 - 12546241
Alignment:
Q  1 tgtttaattgctttaatagaaatatgagttttacataaac 40  Q
    ||||||||||||||||||||||||||||| ||||| ||||    
T  12546202 tgtttaattgctttaatagaaatatgagtgttacaaaaac 12546241  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 44051704 - 44051669
Alignment:
Q  1 tgtttaattgctttaatagaaatatgagttttacat 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  44051704 tgtttaattgctttaatagaaatatgagtgttacat 44051669  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 13244236 - 13244202
Alignment:
Q  1 tgtttaattgctttaatagaaatatgagttttaca 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  13244236 tgtttaattgctttaatagaaatatgagtgttaca 13244202  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 44344681 - 44344647
Alignment:
Q  1 tgtttaattgctttaatagaaatatgagttttaca 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  44344681 tgtttaattgctttaatagaaatatgagtgttaca 44344647  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 53707207 - 53707241
Alignment:
Q  1 tgtttaattgctttaatagaaatatgagttttaca 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  53707207 tgtttaattgctttaatagaaatatgagtgttaca 53707241  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 53910122 - 53910156
Alignment:
Q  1 tgtttaattgctttaatagaaatatgagttttaca 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  53910122 tgtttaattgctttaatagaaatatgagtgttaca 53910156  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 30457483 - 30457446
Alignment:
Q  1 tgtttaattgctttaatagaaatatgagttttacataa 38  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  30457483 tgtttaattgctttaatagaaataggagtgttacataa 30457446  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8874738 - 8874774
Alignment:
Q  1 tgtttaattgctttaatagaaatatgagttttacata 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  8874738 tgtttaattgctttaatagaaataggagtgttacata 8874774  T

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Target: scaffold0316 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 19956 - 19922
Alignment:
Q  1 tgtttaattgctttaatagaaatatgagttttaca 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  19956 tgtttaattgctttaatagaaatatgagtgttaca 19922  T

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Target: scaffold0116 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 27536 - 27502
Alignment:
Q  1 tgtttaattgctttaatagaaatatgagttttaca 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  27536 tgtttaattgctttaatagaaatatgagtgttaca 27502  T

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Target: scaffold0021 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 139068 - 139102
Alignment:
Q  1 tgtttaattgctttaatagaaatatgagttttaca 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  139068 tgtttaattgctttaatagaaatatgagtgttaca 139102  T

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Target: scaffold0008 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 28057 - 28023
Alignment:
Q  1 tgtttaattgctttaatagaaatatgagttttaca 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  28057 tgtttaattgctttaatagaaatatgagtgttaca 28023  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 37604880 - 37604846
Alignment:
Q  1 tgtttaattgctttaatagaaatatgagttttaca 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  37604880 tgtttaattgctttaatagaaatatgagtgttaca 37604846  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 25173120 - 25173086
Alignment:
Q  1 tgtttaattgctttaatagaaatatgagttttaca 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  25173120 tgtttaattgctttaatagaaatatgagtgttaca 25173086  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 10736442 - 10736408
Alignment:
Q  1 tgtttaattgctttaatagaaatatgagttttaca 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  10736442 tgtttaattgctttaatagaaatatgagtgttaca 10736408  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 50114396 - 50114430
Alignment:
Q  1 tgtttaattgctttaatagaaatatgagttttaca 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  50114396 tgtttaattgctttaatagaaatatgagtgttaca 50114430  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 460446 - 460412
Alignment:
Q  1 tgtttaattgctttaatagaaatatgagttttaca 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  460446 tgtttaattgctttaatagaaatatgagtgttaca 460412  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 23837652 - 23837686
Alignment:
Q  1 tgtttaattgctttaatagaaatatgagttttaca 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  23837652 tgtttaattgctttaatagaaatatgagtgttaca 23837686  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 36893019 - 36893053
Alignment:
Q  1 tgtttaattgctttaatagaaatatgagttttaca 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  36893019 tgtttaattgctttaatagaaatatgagtgttaca 36893053  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 35052751 - 35052717
Alignment:
Q  1 tgtttaattgctttaatagaaatatgagttttaca 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  35052751 tgtttaattgctttaatagaaatatgagtgttaca 35052717  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 35524741 - 35524782
Alignment:
Q  1 tgtttaattgctttaatagaaatatgagttttacataaactg 42  Q
    |||||||||||||||||||||||| |||| |||||| |||||    
T  35524741 tgtttaattgctttaatagaaataggagtgttacattaactg 35524782  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5074576 - 5074612
Alignment:
Q  1 tgtttaattgctttaatagaaatatgagttttacata 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  5074576 tgtttaattgctttaatagaaataggagtgttacata 5074612  T

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Target: scaffold0407 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0407
Description:

Target: scaffold0407; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 507 - 539
Alignment:
Q  4 ttaattgctttaatagaaatatgagttttacat 36  Q
    |||||||||||||||||||||||||| ||||||    
T  507 ttaattgctttaatagaaatatgagtgttacat 539  T

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Target: scaffold0407; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 6971 - 7003
Alignment:
Q  4 ttaattgctttaatagaaatatgagttttacat 36  Q
    |||||||||||||||||||||||||| ||||||    
T  6971 ttaattgctttaatagaaatatgagtgttacat 7003  T

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Target: scaffold0132 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 39106 - 39070
Alignment:
Q  1 tgtttaattgctttaatagaaatatgagttttacata 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  39106 tgtttaattgctttaatagaaataggagtgttacata 39070  T

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Target: scaffold0103 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 31375 - 31343
Alignment:
Q  3 tttaattgctttaatagaaatatgagttttaca 35  Q
    ||||||||||||||||||||||||||| |||||    
T  31375 tttaattgctttaatagaaatatgagtgttaca 31343  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9733181 - 9733217
Alignment:
Q  1 tgtttaattgctttaatagaaatatgagttttacata 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  9733181 tgtttaattgctttaatagaaataggagtgttacata 9733217  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 24185530 - 24185558
Alignment:
Q  1 tgtttaattgctttaatagaaatatgagt 29  Q
    |||||||||||||||||||||||||||||    
T  24185530 tgtttaattgctttaatagaaatatgagt 24185558  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 43446311 - 43446347
Alignment:
Q  1 tgtttaattgctttaatagaaatatgagttttacata 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  43446311 tgtttaattgctttaatagaaataggagtgttacata 43446347  T

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