View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8903_low_103 (Length: 244)
Name: NF8903_low_103
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_103 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 3348498 - 3348717
Alignment:
| Q |
14 |
acatcacaaataaagaatttaagatgtatacaaattaaattaaatannnnnnnnnnnnactaaaactattttgatatcgaatttaattcatcagaaatga |
113 |
Q |
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| T |
3348498 |
acatcacaaataaagaatttaagatgtatacaaattaaattgaat---ttttttttttactaaaactattttgatatcgaatttaattcatcagaaatga |
3348594 |
T |
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| Q |
114 |
taaataaacacaattttttggacaaatactagacaccatagatagttaagtaatttcgaatttaaaatacaaggacaattttgtcattctattcccatcc |
213 |
Q |
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||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
3348595 |
taaataaacacaactttttggacaaatactagacaccatgggcagttaagtaatttcggatttaaaatataaggacaattttgtcattctattcccatcc |
3348694 |
T |
|
| Q |
214 |
tcctcttcttccctattctctgc |
236 |
Q |
| |
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|||||||| |||||||||||||| |
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| T |
3348695 |
tcctcttcgtccctattctctgc |
3348717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 107 - 236
Target Start/End: Original strand, 39071433 - 39071562
Alignment:
| Q |
107 |
gaaatgataaataaacacaattttttggacaaatactagacaccatagatagttaagtaatttcgaatttaaaatacaaggacaattttgtcattctatt |
206 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39071433 |
gaaatgataaataaacacaactttttggacaaatactagacaccatgggcagttaagtaatttcggatttaaaatacaaggacaattttgtcattctatt |
39071532 |
T |
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| Q |
207 |
cccatcctcctcttcttccctattctctgc |
236 |
Q |
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| T |
39071533 |
cccatcctcctcttcttccctattttctgc |
39071562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 103 - 236
Target Start/End: Original strand, 6143000 - 6143133
Alignment:
| Q |
103 |
atcagaaatgataaataaacacaattttttggacaaatactagacaccatagatagttaagtaatttcgaatttaaaatacaaggacaattttgtcattc |
202 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6143000 |
atcagaaatgataaataaacacaactttttggacaaatactagacaccatgggcagttaagtaatttcggatttaaaatacaaggacaattttgtcattc |
6143099 |
T |
|
| Q |
203 |
tattcccatcctcctcttcttccctattctctgc |
236 |
Q |
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| T |
6143100 |
tattcccatcctcctcttcttccctattttctgc |
6143133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 234
Target Start/End: Original strand, 11303896 - 11304025
Alignment:
| Q |
105 |
cagaaatgataaataaacacaattttttggacaaatactagacaccatagatagttaagtaa-tttcgaatttaaaatacaaggacaattttgtcattct |
203 |
Q |
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|
|||||||||||| |||||||| ||||||||||||||||||| ||||| | | |||||||| ||| || ||||||| | | ||||| ||||||||||| |
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| T |
11303896 |
cagaaatgataagtaaacacagctttttggacaaatactagataccatgggcaattaagtaattttagattttaaaagatagggacagttttgtcattcc |
11303995 |
T |
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| Q |
204 |
attcccatcctcctcttcttccctattctct |
234 |
Q |
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| ||||||||||||| |||||| | |||||| |
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|
| T |
11303996 |
a-tcccatcctcctcctcttccttgttctct |
11304025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 39444032 - 39444108
Alignment:
| Q |
160 |
taagtaatttcgaatttaaaatacaaggacaattttgtcattctattcccatcctcctcttcttccctattctctgc |
236 |
Q |
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|||||||||| || ||||||| | | |||||||| |||||||| |||||||||||||||| ||||| |||||||||| |
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| T |
39444032 |
taagtaattttgactttaaaacatagggacaattgtgtcattccattcccatcctcctctccttccatattctctgc |
39444108 |
T |
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