View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8903_low_104 (Length: 244)
Name: NF8903_low_104
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_104 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 11855513 - 11855748
Alignment:
| Q |
1 |
ctcattccttcaagattctgcaacttactcggtgcttgaggcaaacccatgtacaagtcaatcccatacatgtcatcagcattaggttcagccggcttcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11855513 |
ctcattccttcaagattctgcaacttactcggtgcttgaggcaaacccatatacaagtcaatcccatacatgtcatcagcattaggttcagccggcttcc |
11855612 |
T |
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| Q |
101 |
aaatctcaacaagaggtgctaacacattcactacgtatcccatatcgggacgctgatgaggctcccttgcacagcagtggcttgccaattctgaaatgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11855613 |
aaatctcaacaagaggtgctaacacattcactacgtatcccatatcgggacgctgatgaggctcccttgcacagcagtggcttgccaattctgaaatgat |
11855712 |
T |
|
| Q |
201 |
cctgaaactctccaagccttcctcgttgatgtccat |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
11855713 |
cctgaaactctccaagccttcctcgttgatgtccat |
11855748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 11838326 - 11838091
Alignment:
| Q |
1 |
ctcattccttcaagattctgcaacttactcggtgcttgaggcaaacccatgtacaagtcaatcccatacatgtcatcagcattaggttcagccggcttcc |
100 |
Q |
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|||||||||||| |||||||| ||||| || ||||||||||||||| ||| | ||||||||||||||| || |||||| ||| ||||||||||||||||| |
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| T |
11838326 |
ctcattccttcatgattctgccacttaatcagtgcttgaggcaaactcatatccaagtcaatcccatatatatcatcaacatcaggttcagccggcttcc |
11838227 |
T |
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| Q |
101 |
aaatctcaacaagaggtgctaacacattcactacgtatcccatatcgggacgctgatgaggctcccttgcacagcagtggcttgccaattctgaaatgat |
200 |
Q |
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| T |
11838226 |
aaatctcgacaaggggtgctagcacattcactacgtgtcccatgtcaggacgctgattaggctcccttgcacaacagtggctagccaatcctgcaatagt |
11838127 |
T |
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| Q |
201 |
cctgaaactctccaagccttcctcgttgatgtccat |
236 |
Q |
| |
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| T |
11838126 |
cctgaaactctccaagccttcctcgtcgatgtccat |
11838091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 11851005 - 11850774
Alignment:
| Q |
5 |
ttccttcaagattctgcaacttactcggtgcttgaggcaaacccatgtacaagtcaatcccatacatgtcatcagcattaggttcagccggcttccaaat |
104 |
Q |
| |
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|||||||||||||| || ||||||| || ||||||| |||| || | ||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
11851005 |
ttccttcaagattcggccacttactaagtccttgaggaaaacttatatccaagtcaatcccatacatgtcatcagcttcaggttcagccggcttccaaat |
11850906 |
T |
|
| Q |
105 |
ctcaacaagaggtgctaacacattcactacgtatcccatatcgggacgctgatgaggctcccttgcacagcagtggcttgccaattctgaaatgatcctg |
204 |
Q |
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||| ||||||||||||| |||||||||||| | |||||| || |||||||||||||||||||||||||| || |||||||||||| ||| || ||||| |
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| T |
11850905 |
ctcgacaagaggtgctagcacattcactacatgtcccatgtcaggacgctgatgaggctcccttgcacaacattggcttgccaatcctgccatagtcctg |
11850806 |
T |
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| Q |
205 |
aaactctccaagccttcctcgttgatgtccat |
236 |
Q |
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|||||||||| ||||||||||| |||||||| |
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| T |
11850805 |
aaactctccaggccttcctcgtctatgtccat |
11850774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 27442123 - 27442348
Alignment:
| Q |
1 |
ctcattccttcaagattctgcaacttactcggtgcttgaggcaaacccatgtacaagtcaatcccatacatgtcatcagcattaggttcagccggcttcc |
100 |
Q |
| |
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|||||||||||||| |||| | |||| ||| | ||| ||| |||| ||| |||||| || |||| ||||||||| |||| ||||||||||||||||| |
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| T |
27442123 |
ctcattccttcaaggttcttccacttgctcatttcttcaggtaaactcataggcaagtccataccatgcatgtcatcggcatcaggttcagccggcttcc |
27442222 |
T |
|
| Q |
101 |
aaatctcaacaagaggtgctaacacattcactacgtatcccatatcgggacgctgatgaggctcccttgcacagcagtggcttgccaattctgaaatgat |
200 |
Q |
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||||||||||||||||||||| ||||| |||||||||| ||| |||||||||| || ||||||| || |||||||||| ||||||||||||| ||| | |
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| T |
27442223 |
aaatctcaacaagaggtgctagcacatggactacgtatcgcatgtcgggacgcttattaggctccttttcacagcagtgtcttgccaattctgcaatagt |
27442322 |
T |
|
| Q |
201 |
cctgaaactctccaagccttcctcgt |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
27442323 |
cctgaaactctccaagccttcctcgt |
27442348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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