View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8903_low_105 (Length: 242)
Name: NF8903_low_105
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_105 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 49788646 - 49788869
Alignment:
| Q |
20 |
tacattgcatacaatacccaacattctgcaactacatggcattaagatttccttttttacttattaagattgttctttaatcacatccccaaatgcaata |
119 |
Q |
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| T |
49788646 |
tacattgcatacaatacccaacattctgcaactacatggcattaagatttccttttttacttattaagattgttctttaatcacatccccaaatgcaata |
49788745 |
T |
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| Q |
120 |
ttgtcatttttcgttcaacctaattc-aannnnnnnnnnnactgaacctaattcaaatgatccaatggagttagtacatttaaacgttttacaactcgaa |
218 |
Q |
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| T |
49788746 |
ttgtcatttttcgttcaacctaattcaaattattttttttactgaacctaattcaaatgatccaatggagttagtacatttaaacgttttacaactcgaa |
49788845 |
T |
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| Q |
219 |
atggagaaaattattgtctctgct |
242 |
Q |
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| T |
49788846 |
atggagaaaattattatccctgct |
49788869 |
T |
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