View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8903_low_117 (Length: 209)
Name: NF8903_low_117
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_117 |
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| [»] scaffold0691 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 7e-85; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 3303186 - 3303368
Alignment:
| Q |
19 |
cctcattcctaacaagcccttctgccatccattgccgagtaagtctcttccgattgatggagtagtcctcaggatatataccaaaatagagcatgcatga |
118 |
Q |
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|||| ||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3303186 |
cctccttcttaacaaacccttctgccatccattgccgagtaagtctcttccgtttgatggagtagtcctcaggatatataccaaaatatagcatgcatga |
3303285 |
T |
|
| Q |
119 |
tttcaaatggtaaggcaaatcatcataactaagagataaaattcttattagactagtcaagtgcacattgcgctctaactcca |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3303286 |
tttcaaatggtaaggcaaatcatcataactaagagataaaattcttatcagactagtcaagtgcacattgcgctctaactcca |
3303368 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 3321471 - 3321656
Alignment:
| Q |
17 |
ctcctcattcctaacaagcccttctgccatccattgccgagtaagtctcttccgattgatggagtagtcctcaggatatataccaaaatagagcatgcat |
116 |
Q |
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|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3321471 |
ctcctcattcttaacaaacccttctgccatccattgccgagtaagtctcttccgattgatggagtagtcctcaggatatataccaaaatatagcatgcat |
3321570 |
T |
|
| Q |
117 |
gatttcaaatggtaaggcaaatcatcataactaagagataaaattcttattagactagtcaagtgcacattgcgctctaactccat |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||| ||||||||||||| |
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| T |
3321571 |
gatttcaaatggtaaggcaaatcatcataactaagagataaaatctttgttagactattcaagtgcacattgtgctctaactccat |
3321656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 3309872 - 3310057
Alignment:
| Q |
17 |
ctcctcattcctaacaagcccttctgccatccattgccgagtaagtctcttccgattgatggagtagtcctcaggatatataccaaaatagagcatgcat |
116 |
Q |
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|||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
3309872 |
ctcctcattcataacaaacccttcagccatccattgccgagtaagtctcttccgattgatggtgtagtcctcaggatatataccaaaatacagcatgcaa |
3309971 |
T |
|
| Q |
117 |
gatttcaaatggtaaggcaaatcatcataactaagagataaaattcttattagactagtcaagtgcacattgcgctctaactccat |
202 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||| || ||||||||||||| ||||| ||| ||||||||||||| |
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| T |
3309972 |
gatttcaagtggtgaggcaaatcatcataactaagagataaaatctttgttagactagtcaaatgcacgttgtgctctaactccat |
3310057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 26 - 202
Target Start/End: Complemental strand, 3201822 - 3201646
Alignment:
| Q |
26 |
cctaacaagcccttctgccatccattgccgagtaagtctcttccgattgatggagtagtcctcaggatatataccaaaatagagcatgcatgatttcaaa |
125 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||| | |||||| ||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
3201822 |
cctaacaaacccttcagccatccattgccgagtaagtctcttcgtagtgatggtgtagtcctcgggatatataccaaaatacagcatgcatgatttcaaa |
3201723 |
T |
|
| Q |
126 |
tggtaaggcaaatcatcataactaagagataaaattcttattagactagtcaagtgcacattgcgctctaactccat |
202 |
Q |
| |
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||| |||||||||||| ||||| ||||||||||| |||||||||| ||||| ||||||||||||||||||||||| |
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| T |
3201722 |
tggctaggcaaatcatcgtaacttagagataaaatctttattagacttgtcaaatgcacattgcgctctaactccat |
3201646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 3356608 - 3356790
Alignment:
| Q |
20 |
ctcattcctaacaagcccttctgccatccattgccgagtaagtctcttccgattgatggagtagtcctcaggatatataccaaaatagagcatgcatgat |
119 |
Q |
| |
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||||||| |||||| |||||| ||||||||||||| ||||||||| || || || ||| ||||||||| ||||| || ||||| || | |||||| ||| |
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| T |
3356608 |
ctcattcttaacaaacccttcagccatccattgcctagtaagtctttttcgtttaatgatgtagtcctctggatacatgccaaagtataacatgcaggat |
3356707 |
T |
|
| Q |
120 |
ttcaaatggtaaggcaaatcatcataactaagagataaaattcttattagactagtcaagtgcacattgcgctctaactccat |
202 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3356708 |
ttcagatggtaaggcaaatcatcataactaagacttaaaatccttattatactagtcaagtgcacattgcgctctaactccat |
3356790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 20 - 177
Target Start/End: Original strand, 3220713 - 3220870
Alignment:
| Q |
20 |
ctcattcctaacaagcccttctgccatccattgccgagtaagtctcttccgattgatggagtagtcctcaggatatataccaaaatagagcatgcatgat |
119 |
Q |
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||||||| |||||| |||||| ||||||||||||||||||| ||| ||||| |||||| ||||||||||||||||||||||||||| | ||| |||||| |
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| T |
3220713 |
ctcattcttaacaaacccttcagccatccattgccgagtaattcttttccgtttgatgacgtagtcctcaggatatataccaaaatataacatacatgat |
3220812 |
T |
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| Q |
120 |
ttcaaatggtaaggcaaatcatcataactaagagataaaattcttattagactagtca |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| || || ||||||| ||||| |
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| T |
3220813 |
ttcaaatggtaaggcaaatcatcataactaagggataatatcctcattagaccagtca |
3220870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 49 - 202
Target Start/End: Complemental strand, 3722401 - 3722247
Alignment:
| Q |
49 |
attgccgagtaagtctcttccgattgatggagtagtcc-tcaggatatataccaaaatagagcatgcatgatttcaaatggtaaggcaaatcatcataac |
147 |
Q |
| |
|
|||||| ||||| ||| || || |||||| ||||||| |||||||| || ||||| || | |||||||||||||| ||||||||||||||||||||||| |
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| T |
3722401 |
attgcctagtaattctttttcgtttgatgatgtagtccctcaggatacatgccaaagtataacatgcatgatttcagatggtaaggcaaatcatcataac |
3722302 |
T |
|
| Q |
148 |
taagagataaaattcttattagactagtcaagtgcacattgcgctctaactccat |
202 |
Q |
| |
|
||||| ||||||| ||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
3722301 |
taagacataaaatccttattatactagtcaaatgcacattgcgctctaactccat |
3722247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 189
Target Start/End: Original strand, 3197626 - 3197779
Alignment:
| Q |
36 |
ccttctgccatccattgccgagtaagtctcttccgattgatggagtagtcctcaggatatataccaaaatagagcatgcatgatttcaaatggtaaggca |
135 |
Q |
| |
|
||||| || |||||||||| |||||||||||| | |||||||| || || ||| ||||| ||||||||||| | ||||||| ||| ||||| |||| | |
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|
| T |
3197626 |
ccttcggctatccattgcctagtaagtctcttacaattgatggtgtggttctccggatagataccaaaatacaacatgcatagttttaaatgacaaggaa |
3197725 |
T |
|
| Q |
136 |
aatcatcataactaagagataaaattcttattagactagtcaagtgcacattgc |
189 |
Q |
| |
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||| |||||||| |||||||||| || |||||| ||| || |||||||||| |
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|
| T |
3197726 |
gatcctcataactccgagataaaatcattgttagacgagtgaaatgcacattgc |
3197779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 160
Target Start/End: Complemental strand, 2808155 - 2808023
Alignment:
| Q |
28 |
taacaagcccttctgccatccattgccgagtaagtctcttccgattgatggagtagtcctcaggatatataccaaaatagagcatgcatgatttcaaatg |
127 |
Q |
| |
|
|||||| |||||| || |||||||| ||||| | |||||| |||| || ||||||||||| ||||||||||||||||| | ||||| | |||||| | |
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| T |
2808155 |
taacaaacccttcagctatccattgtcgagttaatctcttatgattaatagagtagtcctctggatatataccaaaatacaaaatgcagggtttcaagta |
2808056 |
T |
|
| Q |
128 |
gtaaggcaaatcatcataactaagagataaaat |
160 |
Q |
| |
|
||| ||||| |||| ||||| || |||||||| |
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|
| T |
2808055 |
gtagggcaagccatcgtaactcagtgataaaat |
2808023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 45 - 175
Target Start/End: Original strand, 2837867 - 2837997
Alignment:
| Q |
45 |
atccattgccgagtaagtctcttccgattgatggagtagtcctcaggatatataccaaaatagagcatgcatgatttcaaatggtaaggcaaatcatcat |
144 |
Q |
| |
|
|||||||||| ||| |||||| | |||| |||||||| ||||| ||||||||||||||||| | ||||||| ||| |||| ||| |||| |||| |
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|
| T |
2837867 |
atccattgcctagttagtctcctatgattaatggagtaatcctctggatatataccaaaatacaaaatgcatggttttaaatagtacggcaggctgtcat |
2837966 |
T |
|
| Q |
145 |
aactaagagataaaattcttattagactagt |
175 |
Q |
| |
|
|||| ||||||||||| || |||||||||| |
|
|
| T |
2837967 |
aactgagagataaaatctttgttagactagt |
2837997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 174
Target Start/End: Complemental strand, 2769950 - 2769811
Alignment:
| Q |
35 |
cccttctgccatccattgccgagtaagtctcttccgattgatggagtagtcctcaggatatataccaaaatagagcatgcatgatttcaaatggtaaggc |
134 |
Q |
| |
|
|||||| || ||||||||||| || | |||||| ||| || || ||||| | |||||||||||||||||| | ||||||| |||||| | |||||| |
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|
| T |
2769950 |
cccttcagctatccattgccgtgttaatctcttattattaatagaatagtcttgaggatatataccaaaatacaaaatgcatggtttcaagtagtaagga |
2769851 |
T |
|
| Q |
135 |
aaatcatcataactaagagataaaattcttattagactag |
174 |
Q |
| |
|
| |||||||||||||||| ||||| || ||||||||| |
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|
| T |
2769850 |
aggccatcataactaagagacaaaatctttgttagactag |
2769811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 160
Target Start/End: Original strand, 2855077 - 2855192
Alignment:
| Q |
45 |
atccattgccgagtaagtctcttccgattgatggagtagtcctcaggatatataccaaaatagagcatgcatgatttcaaatggtaaggcaaatcatcat |
144 |
Q |
| |
|
|||||||||| ||| |||||| | |||| |||||||| ||||| ||||||||||||||||| | ||||||| ||| |||| ||| |||| |||| |
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|
| T |
2855077 |
atccattgcctagttagtctcctatgattaatggagtaatcctctggatatataccaaaatacaaaatgcatggttttaaatagtacggcaggctgtcat |
2855176 |
T |
|
| Q |
145 |
aactaagagataaaat |
160 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
2855177 |
aactgagagataaaat |
2855192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 160
Target Start/End: Original strand, 5402 - 5534
Alignment:
| Q |
28 |
taacaagcccttctgccatccattgccgagtaagtctcttccgattgatggagtagtcctcaggatatataccaaaatagagcatgcatgatttcaaatg |
127 |
Q |
| |
|
|||||| |||||| || |||||||| ||||| | |||||| |||| || || |||||||| ||||||||||||||||| | ||||||| |||||| | |
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|
| T |
5402 |
taacaaacccttcagctatccattgacgagttaatctcttatgattaatagaatagtcctctggatatataccaaaatacaaaatgcatggtttcaagta |
5501 |
T |
|
| Q |
128 |
gtaaggcaaatcatcataactaagagataaaat |
160 |
Q |
| |
|
|||||||| ||||||||||||| || ||||| |
|
|
| T |
5502 |
gtaaggcaggccatcataactaagtgacaaaat |
5534 |
T |
|
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