View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8903_low_13 (Length: 642)
Name: NF8903_low_13
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 8e-72; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 28 - 177
Target Start/End: Complemental strand, 33050789 - 33050640
Alignment:
| Q |
28 |
cttagataatgagatttgctaaaacagtggatcattgttacaaataagtgaacatttgtattatatttggcctcatttagaagatttgattagtctacat |
127 |
Q |
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| T |
33050789 |
cttagataatgagatttgctaaaacagtggatcattgttacaaataagtgaacatttgtattatatttggccttattgagaagattagattagtctacat |
33050690 |
T |
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| Q |
128 |
gttaaacttcagacatatgcttgtcttttttaaatattttaatcattggc |
177 |
Q |
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| T |
33050689 |
gttaaacttcagacatatgcttgtcttttttaaatattttaatcattggc |
33050640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 297 - 441
Target Start/End: Complemental strand, 33050501 - 33050361
Alignment:
| Q |
297 |
tttgttaatgaaaagactcagaatatgggtggtgatataacagaatggtcggcaaggtaaaaaatataataccattacgacgaacgagacctatcacagt |
396 |
Q |
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| T |
33050501 |
tttgttaatgaaaagactcagaatatgggtggtgatataacagaatggtcggcaaggtaaaaatt----taccattacgacgaacgagacctgtcacagt |
33050406 |
T |
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| Q |
397 |
attcatcagtgtctagaaaattaataaaatcatgtttataacaac |
441 |
Q |
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| T |
33050405 |
attcatcagtgtctagaaaattaataaaatcatgtttataacaac |
33050361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 538 - 629
Target Start/End: Complemental strand, 33050264 - 33050172
Alignment:
| Q |
538 |
ccaagaagttagtaagttagtgattgattggtatcaatatcaatca-ccaattcattggagtccttaacatagctgccaatcatacactaact |
629 |
Q |
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| T |
33050264 |
ccaagaagttagtaagttagtgattgattggtatcaatatcaatcacccaattcattggagtccttaacatagctgccaatcatacactaact |
33050172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 311 - 409
Target Start/End: Complemental strand, 33031935 - 33031841
Alignment:
| Q |
311 |
gactcagaatatgggtggtgatataacagaatggtcggcaaggtaaaaaatataataccattacgacgaacgagacctatcacagtattcatcagtgtc |
409 |
Q |
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| T |
33031935 |
gactcagaatatgggtggtgatataacagaatggtcggcaaggtaaaaatt----taccattacgacgaacgagacctatcacagtattcatcaatgtc |
33031841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 92 - 177
Target Start/End: Complemental strand, 33032074 - 33031989
Alignment:
| Q |
92 |
atttggcctcatttagaagatttgattagtctacatgttaaacttcagacatatgcttgtcttttttaaatattttaatcattggc |
177 |
Q |
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| T |
33032074 |
atttggcctcattgagaagattagattagtctacatgttaaacttcagacatatgcttgtctattataaatatttaaatcattggc |
33031989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 306 - 395
Target Start/End: Complemental strand, 38903301 - 38903215
Alignment:
| Q |
306 |
gaaaagactcagaatatgggtggtgatataacagaatggtcggcaaggtaaaaaatataatacc-attacgacgaacgagacctatcacag |
395 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||||| ||| || ||| |||||||||||||||||||||||||| |
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| T |
38903301 |
gaaaggactcagaatatgggtggtgatataacaggatggtcggcaaggtcgaaa----aagaccaattacgacgaacgagacctatcacag |
38903215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 311 - 353
Target Start/End: Complemental strand, 43521285 - 43521243
Alignment:
| Q |
311 |
gactcagaatatgggtggtgatataacagaatggtcggcaagg |
353 |
Q |
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| T |
43521285 |
gactcagaatatgggtggtgatataacaggatggtcggcaagg |
43521243 |
T |
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