View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8903_low_14 (Length: 620)
Name: NF8903_low_14
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 17 - 565
Target Start/End: Original strand, 55066934 - 55067484
Alignment:
| Q |
17 |
catcaatgaccgtcggatatcctctttctcattcattatttcagccaaaatgacaaaactaatccttaaacacatgtagccgctatactgtgttcttgtt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
55066934 |
catcaatgaccgtcggatatcctctttctcatacattatttcagccaaaatgacaaaactaatccttaaacacacgtagccgctatactgtgttcttgtt |
55067033 |
T |
|
| Q |
117 |
gccaccgcctcactattcaaaaagcaaattttgcctctccactatttgaaaacagtgctacag-------agacgaaaataaacatatcagaggtattga |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
55067034 |
gccaccgcctcactattcaaaaagcaaattttgcctctccactatttgaaaacagtgctgcagtctgcagagacgaaaataaacatatcagaggtattga |
55067133 |
T |
|
| Q |
210 |
ttgtctctgcactgcggttgttacggtgacaaatagctgcaatttatagacggaagattttgcaacgaggacaatctaccataaggcccttcccttcggt |
309 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
55067134 |
tcgtctctgcactgcagttgttacggtgacaaatagctgcaatttatagacggaagattttgcaatgaggacaatctaccataaggcccttc-----gga |
55067228 |
T |
|
| Q |
310 |
gaaagcaatgaggactatcaacagcggcaaccgttcccgatggcggaaacggaacaaacaggttgcagaaaggctacgagtggtggcaatctagcagcca |
409 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
55067229 |
gaaagcaatgaggactatcaacggtggcaaccgttcccgatggcggaaacgaaacaaacaggttgcagaaaggctacaagtggtggcaatctagcagcca |
55067328 |
T |
|
| Q |
410 |
tgcaaagaggcggttatctacccattcgataatggaaatattatattttgagcatttttatgttatttttaataaaatatagccctaagtaatgagtttg |
509 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55067329 |
tgcaaagaggcggttatctaccgattcaataatggaaatattatattttgagcatttttattttatttttaataaaatatagccctaagtaatgagtttg |
55067428 |
T |
|
| Q |
510 |
cacgttaagctgctttttcgtgtgcgaaaaaatcatcgcaccatttagcactgctg |
565 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55067429 |
cacgttaagctgctttttcgtgtgcgaaaaaatcatcgcaccatttagcactgctg |
55067484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 31714802 - 31714723
Alignment:
| Q |
98 |
gctatactgtgttcttgttgccaccgcctcactattcaaaaagcaaattttgcctctccactatttgaaaacagtgctac |
177 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| || |||||||||||||||| || |||||||| ||||||| |
|
|
| T |
31714802 |
gctatactgtgttgttgttgccaccgcctcactattcactgagaaaattttgcctctccagtaattgaaaacggtgctac |
31714723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 51273923 - 51274002
Alignment:
| Q |
98 |
gctatactgtgttcttgttgccaccgcctcactattcaaaaagcaaattttgcctctccactatttgaaaacagtgctac |
177 |
Q |
| |
|
||||||||||||| || ||||||||| ||||||||||| || ||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
51273923 |
gctatactgtgttgttcttgccaccgtctcactattcactgagaaaattttgcctctccactaattggaaacagtgctac |
51274002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 30330974 - 30330930
Alignment:
| Q |
39 |
tctttctcattcattatttcagccaaaatgacaaaactaatcctt |
83 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30330974 |
tctttctcattcattatttgagccaaaatgacaaaactaatcctt |
30330930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 362 - 416
Target Start/End: Complemental strand, 30330848 - 30330794
Alignment:
| Q |
362 |
aacaaacaggttgcagaaaggctacgagtggtggcaatctagcagccatgcaaag |
416 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||| |||||||||||| ||||| |
|
|
| T |
30330848 |
aacaaacagattgcagaaaggctacaagtggtggcagtctagcagccatccaaag |
30330794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 532
Target Start/End: Complemental strand, 30330771 - 30330674
Alignment:
| Q |
427 |
ctacccattcgataatggaaatattatattttgagcatttttatgttatttttaataaaatatagccctaagtaatgagtttgcacgttaagctgctttt |
526 |
Q |
| |
|
||||| |||| ||||| ||||||||||||||||| ||||||| |||||| |||| || || ||| |||||||||||||||||||||| ||| | |
|
|
| T |
30330771 |
ctaccaattccataatagaaatattatattttgaccattttt--------tttaatgaaatttaaccttaaataatgagtttgcacgttaagctacttat |
30330680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University