View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8903_low_15 (Length: 554)
Name: NF8903_low_15
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-138; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 11 - 321
Target Start/End: Complemental strand, 14972403 - 14972105
Alignment:
| Q |
11 |
gatggacatcactagttttatacaaacaaggtggcggtgacacaaccaacacctttgactatcccataatgattcaacatcgaaagttaattactccaac |
110 |
Q |
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| T |
14972403 |
gatggacttcactagttttatacaaacaaggtggcggtgacacaaccaacacctttgactatcccataattattcaacatcgaaagttaattactccaac |
14972304 |
T |
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| Q |
111 |
cctacacatcaaacataatgaaacaaaacgggccaacagacgatctggaaacatggtggtgttgagggccaaacaccactcatcccaccactcatcccac |
210 |
Q |
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| T |
14972303 |
cctacacatcaaatataatgaaacaaaacgggccgacagacgatctggaaacatgatggtgttgagggccaaacaccactcatccca------------c |
14972216 |
T |
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| Q |
211 |
caccaatgaaaatatatcttgaaaatataaggtttaaataaaagggtgagggcggtgggtgagttcctggagagaagttagataagggtttgctgaaaga |
310 |
Q |
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| T |
14972215 |
caccaatgaaaatatatcttgaaaatataaggtttaaataaaagggtgagggcggtgggtgagttcctggagagaagttagataagggtttgctgaaaga |
14972116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 447 - 540
Target Start/End: Complemental strand, 14971978 - 14971885
Alignment:
| Q |
447 |
gttgagtcttagttatgattatgatgatgcacttttctttagtattatattatgttcaaagaaatagagttttgatgagtaatgatgtaatatg |
540 |
Q |
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| T |
14971978 |
gttgagtcttagttatgattatgatgatgcacttttctttagtattatattatgttcaaagaaatagagttttgatgagtaatgatgtaatatg |
14971885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 447 - 540
Target Start/End: Complemental strand, 20042086 - 20041993
Alignment:
| Q |
447 |
gttgagtcttagttatgattatgatgatgcacttttctttagtattatattatgttcaaagaaatagagttttgatgagtaatgatgtaatatg |
540 |
Q |
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| T |
20042086 |
gttgagtcttatttaggattatgatgatgcacttttatttaatattatattattttaaaagaaatagagttatgataagtaatgatgtaatatg |
20041993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 447 - 540
Target Start/End: Complemental strand, 20030875 - 20030782
Alignment:
| Q |
447 |
gttgagtcttagttatgattatgatgatgcacttttctttagtattatattatgttcaaagaaatagagttttgatgagtaatgatgtaatatg |
540 |
Q |
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| T |
20030875 |
gttgagtcttatttaggattatgatgatgcacttttatttaatattatattattctaaaagaaatagagttttgaaaagtaatgatgtaatatg |
20030782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 447 - 499
Target Start/End: Complemental strand, 20030972 - 20030920
Alignment:
| Q |
447 |
gttgagtcttagttatgattatgatgatgcacttttctttagtattatattat |
499 |
Q |
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| T |
20030972 |
gttgagtcttatttaggattatgatgatgcacttttatttaatattatattat |
20030920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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