View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8903_low_18 (Length: 523)
Name: NF8903_low_18
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 486; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 14 - 511
Target Start/End: Original strand, 14598287 - 14598784
Alignment:
| Q |
14 |
catcatactcccttttcacccttcttctgtccttcacgaaatccagtttactcttgttcttggttggatccatttttaacgcaaagtaagaatcaggatt |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14598287 |
catcgtactcccttttcacccttcttctgtccttcacgaaatccagtttactcttgttcttggttggatcgatttttaacgcaaagtaagaatcaggatt |
14598386 |
T |
|
| Q |
114 |
ccttggctcaatattgtgtttgcgacaaaagggaacccataaatcagcaaaacttgcggcctcagccatcgcttcaaaactcaagagagctcctccatca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14598387 |
ccttggctcaatattgtgtttgcgacaaaagggaacccataaatcagcaaaacttgcggcctcagccatcgcttcaaaactcaagagagctcctccatca |
14598486 |
T |
|
| Q |
214 |
tctgaaacataacaagcgagtttctccacagggtaatcaactgctaatatggaaagaatggtattggcagttacaagaggcggctccttttcaggatcag |
313 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14598487 |
tctgaaacataacaagcgagtttctccacagggtaatcaactgctaatatggaaagaatggtattggcagttacaagaggcggctccttttcaggatcag |
14598586 |
T |
|
| Q |
314 |
cagttgacacaaagaggtcacaaccaggcagatcagatctccctgtgggattttctggggatggagcatcaaatttctcataaaggacggcaaggtcagt |
413 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14598587 |
cagttgacacaaagaggtcacaaccaggcagatcagatctccctgtgggattttctggggatggagcatcaaatttctcataaaggacggcaaggtcagt |
14598686 |
T |
|
| Q |
414 |
gctacggttaaccggtgaaatctttggaatttggtcaagtatccatgaaaagccgaaccatatctcacaggtaattgacatgagccataaccatattg |
511 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14598687 |
gctacggttaaccggtgaaatctttggaatttggtcaagtatccatgaaaagccgaaccatatctcacaagtaattgacatgagccataaccatattg |
14598784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 508
Target Start/End: Complemental strand, 14610189 - 14609695
Alignment:
| Q |
14 |
catcatactcccttttcacccttcttctgtccttcacgaaatccagtttactcttgttcttggttggatccatttttaacgcaaagtaagaatcaggatt |
113 |
Q |
| |
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||||||||||||| |||||||||||||| |||||||| ||||| | | | ||||||||||| |||||||| | ||| | |||||||||||||||||||| |
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| T |
14610189 |
catcatactccctcttcacccttcttctatccttcacaaaatctaatctgctcttgttcttagttggatcgacatttgaggcaaagtaagaatcaggatt |
14610090 |
T |
|
| Q |
114 |
ccttggctcaatattgtgtttgcgacaaaagggaacccataaatcagcaaaacttgcggcctcagccatcgcttcaaaactcaagagagctcctccatca |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || || | || ||||| ||||||||| |
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|
| T |
14610089 |
ccttggctcaatattgtgtttgcgacaaaagggaacccataaatcagcaaaacttgcagcctcagccatggcctcgaatgttaaaagagcacctccatca |
14609990 |
T |
|
| Q |
214 |
tctgaaacataacaagcgagtttctccacagggtaatcaactgctaatatggaaagaatggtattggcagttacaagaggcggctccttttcaggatcag |
313 |
Q |
| |
|
|||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
14609989 |
tctgaaacataacaagcgagcttctccactggataatcaactgctaatatggaaagaatggtattggcagttacaagaggcggctctttatcaggatcag |
14609890 |
T |
|
| Q |
314 |
cagttgacacaaagaggtcacaaccaggcagatcagatctccctgtgggattttctggggatggagcatcaaatttctcataaaggacggcaaggtcagt |
413 |
Q |
| |
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| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||| | | | | |||||||||| ||||||| | |||||||| |
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| T |
14609889 |
ccgtcgacacaaagaggtcacaaccaggcagatcagatcttgctgtgggatttgtcggggttacaacgtggaatttctcatgaaggacgtctaggtcagt |
14609790 |
T |
|
| Q |
414 |
gctacggttaaccggtgaaatctttggaatttggtcaagtatccatgaaaagccgaaccatatctcacaggtaattgacatgagccataaccata |
508 |
Q |
| |
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|||||| ||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||| ||||||| |
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| T |
14609789 |
gctacgattaactggagaaagctttggaatttggtcaagtatccatgaaaagccgaaccatatctcacaagtaattgacataacccacaaccata |
14609695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 96 - 371
Target Start/End: Original strand, 12194677 - 12194952
Alignment:
| Q |
96 |
aaagtaagaatcaggattccttggctcaatattgtgtttgcgacaaaagggaacccataaatcagcaaaacttgcggcctcagccatcgcttcaaaactc |
195 |
Q |
| |
|
||||||||| || || |||||||| ||||| | ||| || |||||||| |||||||| || || ||||||||||| ||||| ||||| || |||||| | |
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| T |
12194677 |
aaagtaagattccgggttccttggttcaatgtcgtgcttccgacaaaaaggaacccacaactccgcaaaacttgctgcctcggccatggcctcaaaagtt |
12194776 |
T |
|
| Q |
196 |
aagagagctcctccatcatctgaaacataacaagcgagtttctccacagggtaatcaactgctaatatggaaagaatggtattggcagttacaagaggcg |
295 |
Q |
| |
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| || | || || || || || |||||||| |||||||| || ||||||||||||||||||| || |||||||||||||| || || ||||| || | |
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| T |
12194777 |
agaagtgaaccgccgtcgtcagagacataacatgcgagtttatcaacagggtaatcaactgctagaattgaaagaatggtatttgcggtaacaaggggtg |
12194876 |
T |
|
| Q |
296 |
gctccttttcaggatcagcagttgacacaaagaggtcacaaccaggcagatcagatctccctgtgggattttctgg |
371 |
Q |
| |
|
|||| ||||| ||||| |||||||||||||| | ||| || || ||||||||| ||||||| |||||| |||| |
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| T |
12194877 |
gctctttttctggatcggcagttgacacaaacatatcaattcccgggagatcagatttccctgttggatttgctgg |
12194952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 106 - 357
Target Start/End: Complemental strand, 44633135 - 44632884
Alignment:
| Q |
106 |
tcaggattccttggctcaatattgtgtttgcgacaaaagggaacccataaatca-gcaaaacttgcggcctcagccatcgcttcaaaactcaagagagct |
204 |
Q |
| |
|
|||||||| ||||||||||| | |||||| | ||| || |||||||| ||||| |||||||| || | |||||| | |||||||| |||| |||||| |
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| T |
44633135 |
tcaggatttcttggctcaatttggtgttttctacagaaaggaaccca-aaatcttgcaaaactagcagtctcagcaagagcttcaaatgtcaaaagagct |
44633037 |
T |
|
| Q |
205 |
cctccatcatctgaaacataacaagcgagtttctccacagggtaatcaactgctaatatggaaagaatggtattggcagttacaagaggcggctcctttt |
304 |
Q |
| |
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|| |||||||| || | ||||||||| | ||| |||||||| ||||||||||| | || || | |||||| || |||||||||||||| ||||| |||| |
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| T |
44633036 |
ccaccatcatcagacaaataacaagcaactttttccacaggataatcaactgcaaggatagataaaatggtgtttgcagttacaagaggtggctcttttt |
44632937 |
T |
|
| Q |
305 |
caggatcagcagttgacacaaagaggtcacaaccaggcagatcagatctccct |
357 |
Q |
| |
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| ||||| |||||||| ||||||| ||| ||||| |||||||| |||||| |
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|
| T |
44632936 |
ctggatctgcagttgaaacaaagacatcaattccagggagatcagacctccct |
44632884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 41491819 - 41491889
Alignment:
| Q |
106 |
tcaggattccttggctcaatattgtgtttgcgacaaaagggaacccataaatcagcaaaacttgcggcctc |
176 |
Q |
| |
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||||| |||||| | ||||| ||||| || |||||||| |||||||| ||||||||||||||||| ||||| |
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|
| T |
41491819 |
tcagggttccttaggtcaatgttgtgcttccgacaaaatggaacccacaaatcagcaaaacttgctgcctc |
41491889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 15419374 - 15419432
Alignment:
| Q |
97 |
aagtaagaatcaggattccttggctcaatattgtgtttgcgacaaaagggaacccataa |
155 |
Q |
| |
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||||||| ||| ||||||||||| || ||||||||||| |||||||| || |||||||| |
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|
| T |
15419374 |
aagtaagcatctggattccttggttcgatattgtgttttcgacaaaatggtacccataa |
15419432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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