View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8903_low_2 (Length: 890)
Name: NF8903_low_2
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 479; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 49 - 580
Target Start/End: Complemental strand, 26880182 - 26879653
Alignment:
| Q |
49 |
cttgtacatattatacaatttacgctgggtttatttaaaggaatgaaccgctgtgtaggagtaggaagaaaagacactgagcgataagatgatactacac |
148 |
Q |
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| T |
26880182 |
cttgtacatattatacaatttacgctgggtttatttaaaggaatgaaccgctgtgtaggagcaggaagaaaagacactgagcgataagatgatactacac |
26880083 |
T |
|
| Q |
149 |
acatgcattgtcacgcacatttgaaaccgcctttgaaattttgttatttattgttttactggtatattttaaatcacattcaaatgtcaggttttatctt |
248 |
Q |
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| T |
26880082 |
acatgcattgtcacgcacatttgaaaccgcctttgaaattttgttatttattgttttactggtatattttaaatcacattcaaatgtcaagttttatctt |
26879983 |
T |
|
| Q |
249 |
cgtacttactagatctttgcgttttttctgcttttgctacatgtcatatttgttttgatctttattgccacaaaatttgcttgttgatgaattaaagcta |
348 |
Q |
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| T |
26879982 |
cgtacttactagatctttgcgttttttctgcttttgctacatgtcatatttgttttgatctttattgccacagaatttgcttgttgatgaattaaagcta |
26879883 |
T |
|
| Q |
349 |
gcagaaattggcccaaaatttgaacatcatgagatgttcccagcacggactaacagtcagattagtcaattttttatgatcgcaatatggctatcaactt |
448 |
Q |
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| T |
26879882 |
gcagaaattggcccaaaatttgaacattatgagatgttcccagcacggactaacagtcagattagtcaattttttatgatcgcaatatggctatcaactt |
26879783 |
T |
|
| Q |
449 |
tattatgatatttatcccatatacctacttcctcaaattttcatttcacctacaaggggtttttaatttannnnnnnngcttctttgatcttctgagaaa |
548 |
Q |
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| T |
26879782 |
tattatgatatttatcccatatacctacttcctcaaattttcatttcacctacaa-gggtttttaattta-tttttttgcttctttgatcttctgagaaa |
26879685 |
T |
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| Q |
549 |
tatgttatttccgcgcattctgtcaagatagt |
580 |
Q |
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| T |
26879684 |
tatgttatttccgcgcattctgtcaagatagt |
26879653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 601 - 880
Target Start/End: Complemental strand, 26879656 - 26879377
Alignment:
| Q |
601 |
tagtaattataatccttttgggactaggtcagacggtatgttcagagctttggtaggggtgcttatgtctttccgttgttcagaagcatacaatttcaat |
700 |
Q |
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| T |
26879656 |
tagtaattataatccttttgggactaggtcagacggtatgttcagagctttggtaggggtgcttatgtctttcccttgttcagaagcatacaatttcaat |
26879557 |
T |
|
| Q |
701 |
caatttttcctctaggtttgatgtgttattcattccctctggatactgtcttccagatttacaacccctactatcctaattccttgaactagagccaaat |
800 |
Q |
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| T |
26879556 |
caatttttcctctaggtttgatgtgttattcattccccctggatactgtctaccagatttacaacccctactattctaattccttgaactagagccaaat |
26879457 |
T |
|
| Q |
801 |
ggcctaactgatatgtgcgcggatcatcactgagatcctgttaaaattcctcactcatattgtgtcttgtgatttgatgt |
880 |
Q |
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| T |
26879456 |
ggcctaactgatatgtgcgcggatcatcactgtgatcctgttaaaattcctcactcttattgtgtcttgtgatttaatgt |
26879377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 227 - 403
Target Start/End: Complemental strand, 40249539 - 40249366
Alignment:
| Q |
227 |
ttcaaatgtcaggttttatcttcgtacttactagatctttgcgttttttctgcttttgctacatgtcatatttgttttgatctttattgccacaaaattt |
326 |
Q |
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| T |
40249539 |
ttcaaacgtcagcttttatctttgtacttgcaagatctcaacactttttctgattttccta-atgtcatatttgttttgatct--actgcaacagaattt |
40249443 |
T |
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| Q |
327 |
gcttgttgatgaattaaagctagcagaaattggcccaaaatttgaacatcatgagatgttcccagcacggactaaca |
403 |
Q |
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| T |
40249442 |
gcttgttgatgaattgaagctagcagaaattggcccaaaatttgaacatcacgaggtgttccctgcacgaactaaca |
40249366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 26880320 - 26880280
Alignment:
| Q |
13 |
cagagatagatgttgatggagttatctggaatgtgacttgt |
53 |
Q |
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| T |
26880320 |
cagagatagatgttgatggagttatctggaatgtgacttgt |
26880280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 40249859 - 40249819
Alignment:
| Q |
13 |
cagagatagatgttgatggagttatctggaatgtgacttgt |
53 |
Q |
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| T |
40249859 |
cagagatagatgttgatggaagtatctggaatgtgacttgt |
40249819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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