View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8903_low_22 (Length: 518)
Name: NF8903_low_22
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 268
Target Start/End: Original strand, 962530 - 962781
Alignment:
| Q |
17 |
agatagcagccgaaaattggcaaaaaccatcatcaaagaaggttgaagaggcagtgatagagataagaagttatgatgaagagaaacacaaagtgggagt |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
962530 |
agatagcagctgaaaattggcaaaaaccatcatcaaagaaggttgaagaggcagtgatagtgataagaagttatgatgaagagaaacacaaagtgggagt |
962629 |
T |
|
| Q |
117 |
agaaaaattggagaggctttgtgaggttggacaaagaggaaaaccttctcttgttactgacctattgagtggtcctatatgcagaattcgtcactttcaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||| |
|
|
| T |
962630 |
agaaaaattggagaggctttgtgaggttggacaaagaggaaaaccttctcttgttactgacctattgggtgatcctatatgtagaattcgtcactttcaa |
962729 |
T |
|
| Q |
217 |
ttacatgttatgctggtaattactatatcttatcttattatactcataactg |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
962730 |
ttacatgttatgctggtaattactatatcttatcttattatactcataactg |
962781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 303 - 509
Target Start/End: Original strand, 962816 - 963021
Alignment:
| Q |
303 |
aaagttgatcgagaaggagaaattattataaaataaagtgacagtaatgactattttacaactatcctcgaagatatttgaannnnnnnncttactgcga |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
962816 |
aaagttgatcgagaaggagaaattattataaaataaagtgacagtaatgactattttacaactatcctcgaagagatttgaattttttttcttactgcga |
962915 |
T |
|
| Q |
403 |
gctaatatctcgttgacacattatcttgaagttgaatcatataacnnnnnnnngattatattaacatataaatgtgtagactaagagttgacacactata |
502 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
962916 |
gctaatatctcatagacacattatcttgaagttgaatcatataac-aaaaaaagattatattaacatataaatgtgtagactaagagttgacacactata |
963014 |
T |
|
| Q |
503 |
ttgatgt |
509 |
Q |
| |
|
||||||| |
|
|
| T |
963015 |
ttgatgt |
963021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 364
Target Start/End: Complemental strand, 48727624 - 48727580
Alignment:
| Q |
320 |
agaaattattataaaataaagtgacagtaatgactattttacaac |
364 |
Q |
| |
|
|||||||||||| || |||||||||| |||||||||||||||||| |
|
|
| T |
48727624 |
agaaattattatgaactaaagtgacattaatgactattttacaac |
48727580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 365
Target Start/End: Original strand, 33998717 - 33998763
Alignment:
| Q |
319 |
gagaaattattataaaataaagtgacagtaatgactattttacaact |
365 |
Q |
| |
|
||||||||| ||| || |||||||||| ||||||||||||||||||| |
|
|
| T |
33998717 |
gagaaattactattaattaaagtgacattaatgactattttacaact |
33998763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University