View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8903_low_25 (Length: 502)
Name: NF8903_low_25
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_25 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 466; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 486
Target Start/End: Original strand, 4315225 - 4315710
Alignment:
| Q |
1 |
aacagcggtgctcacctgcttgttcttctgagtagcagctttggtagaaatgtggtcgagaagatcatcagcaaaataaacagcatctatgagatcatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
4315225 |
aacagcggtgctcacctgcttgttcttctgagtagcagctttggtagaaatgtggtcgagaagatcatcagcaaaataaacagcatctttgagatcatca |
4315324 |
T |
|
| Q |
101 |
agccatttgttaacagcagagtctttgaactgtttctgttcagtatcattaagcacagcttcaacagcataaagagtgttcttcaacctttggatcaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4315325 |
agccatttgttaacagcagagtctttgaactgtttctgttcagtatcattaagcacagcttcaacagcataaagagtgttcttcaacctttggatcaaat |
4315424 |
T |
|
| Q |
201 |
tgacggcaactttcttcccactgatcaagtcaacaacctcaggagaagaaagcttgtcaaggacaacttcaatgaaagcagacaaaaaagcttcaccaac |
300 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4315425 |
tgacggcaactttcttcccacggatcaagtcaacaacctcaggagaagaaagcttgtcaaggacaacttcaatgaaagcagacaaaaaagcttcaccaac |
4315524 |
T |
|
| Q |
301 |
aaccgccgccgccatgatatggatggagattggaccgaaagagataaaatcagagattgattatttgtatctggtgcagtaaggtcgagttgttactttg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
4315525 |
aaccgccgccgccatgatatggatggagattggatcgaaagagatgaaatcagagattgattatttgtatctggtgcagtaaggtcaagttgttactttg |
4315624 |
T |
|
| Q |
401 |
tgaaagtgtgtgttgctgttgtcatgtgtgaatatggtctcagtaacgacaaggaaataggcataggatgctgaaatggatccatt |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4315625 |
tgaaagtgtgtgttgctgttgtcatgtgtgaatatggtctcagtaacgacaaggaaataggcataggatgctgaaatggatccatt |
4315710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 35 - 323
Target Start/End: Original strand, 4306397 - 4306685
Alignment:
| Q |
35 |
gcagctttggtagaaatgtggtcgagaagatcatcagcaaaataaacagcatctatgagatcatcaagccatttgttaacagcagagtctttgaactgtt |
134 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
4306397 |
gcagctttggtagagatgtggtcgagaagatcatcagtaaaataaacagcatctttgagatcatcaagccatttgataacagcagagtctttgagctgtt |
4306496 |
T |
|
| Q |
135 |
tctgttcagtatcattaagcacagcttcaacagcataaagagtgttcttcaacctttggatcaaattgacggcaactttcttcccactgatcaagtcaac |
234 |
Q |
| |
|
||||||||| ||| || | ||||||||||||||||||||||||||||||||||||||| | ||| |||||| ||||||||||||||| |||||||||||| |
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|
| T |
4306497 |
tctgttcagcatcgttcaacacagcttcaacagcataaagagtgttcttcaacctttgaaccaagttgacgtcaactttcttcccacggatcaagtcaac |
4306596 |
T |
|
| Q |
235 |
aacctcaggagaagaaagcttgtcaaggacaacttcaatgaaagcagacaaaaaagcttcaccaacaaccgccgccgccatgatatgga |
323 |
Q |
| |
|
|||||||||||||| |||| |||| |||||||||||||||||||| |||| ||| | |||||| |||||||| | |||||||| |||| |
|
|
| T |
4306597 |
aacctcaggagaagcaagcctgtcgaggacaacttcaatgaaagcggacagaaatgattcacccacaaccgcaacagccatgatttgga |
4306685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 11 - 318
Target Start/End: Complemental strand, 4253265 - 4252958
Alignment:
| Q |
11 |
ctcacctgcttgttcttctgagtagcagctttggtagaaatgtggtcgagaagatcatcagcaaaataaacagcatctatgagatcatcaagccatttgt |
110 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||||| ||| ||||| |||||||| | ||| ||| || || |||||||||| | |||| ||| |
|
|
| T |
4253265 |
ctcacctgcttgtttttctgtgtagcagctttggttgaaatgttgtcaagaaggtcatcagctacatagacaacacctttgagatcatcgatccatctgt |
4253166 |
T |
|
| Q |
111 |
taacagcagagtctttgaactgtttctgttcagtatcattaagcacagcttcaacagcataaagagtgttcttcaacctttggatcaaattgacggcaac |
210 |
Q |
| |
|
||| ||||| || |||||||||||| || || | ||| |||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
4253165 |
taatagcagggtttttgaactgtttttgctccgcatcgttaaacacagcttccacagcataaagagtgttcttcaacctttggaccaaattgacgtcaac |
4253066 |
T |
|
| Q |
211 |
tttcttcccactgatcaagtcaacaacctcaggagaagaaagcttgtcaaggacaacttcaatgaaagcagacaaaaaagcttcaccaacaaccgccgcc |
310 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||| ||| |||| ||||||||||||||||||||||||| ||| |||||||| ||| ||||| | |
|
|
| T |
4253065 |
tttcttcccacggatcaagacaacaacctcaggagaagcgagcctgtcgaggacaacttcaatgaaagcagacagaaatgcttcacctacagccgccact |
4252966 |
T |
|
| Q |
311 |
gccatgat |
318 |
Q |
| |
|
|||||||| |
|
|
| T |
4252965 |
gccatgat |
4252958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 11 - 318
Target Start/End: Original strand, 4309251 - 4309558
Alignment:
| Q |
11 |
ctcacctgcttgttcttctgagtagcagctttggtagaaatgtggtcgagaagatcatcagcaaaataaacagcatctatgagatcatcaagccatttgt |
110 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||| |||||||||||| ||| |||||||||| ||| ||||| ||| |||||||||| |||||||| | |
|
|
| T |
4309251 |
ctcacctccttgttcttccgagtagcagctttggtacaaatgtggtcgaaaaggtcatcagcaacatagacagcgtctttgagatcatcgagccatttct |
4309350 |
T |
|
| Q |
111 |
taacagcagagtctttgaactgtttctgttcagtatcattaagcacagcttcaacagcataaagagtgttcttcaacctttggatcaaattgacggcaac |
210 |
Q |
| |
|
||| |||||||||||||||||||||||| || |||||| ||||||||||| ||||||||||||||||| ||||||||||| | |||||||| | ||| |
|
|
| T |
4309351 |
taatagcagagtctttgaactgtttctgctccacatcattcagcacagcttccacagcataaagagtgttattcaacctttgaaccaaattgatgtaaac |
4309450 |
T |
|
| Q |
211 |
tttcttcccactgatcaagtcaacaacctcaggagaagaaagcttgtcaaggacaacttcaatgaaagcagacaaaaaagcttcaccaacaaccgccgcc |
310 |
Q |
| |
|
||| |||||| ||| ||||||| ||||| |||||||| ||| ||||||||||||||||||| || ||| | |||||||||||||||| | || || |
|
|
| T |
4309451 |
ttttttcccatggatgaagtcaagaacctgaggagaagccagcctgtcaaggacaacttcaattaataaagatagaaaagcttcaccaacagctgcagca |
4309550 |
T |
|
| Q |
311 |
gccatgat |
318 |
Q |
| |
|
|||||||| |
|
|
| T |
4309551 |
gccatgat |
4309558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 4246070 - 4245988
Alignment:
| Q |
82 |
agcatctatgagatcatcaagccatttgttaacagcagagtctttgaactgtttctgttcagtatcattaagcacagcttcaa |
164 |
Q |
| |
|
||||||| |||| ||||||| | | |||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||| |
|
|
| T |
4246070 |
agcatctttgaggtcatcaaactagttgttaacagcagagtctttgagttgtttctgttcagcatcattaaggacagcttcaa |
4245988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 4246001 - 4245957
Alignment:
| Q |
259 |
aaggacaacttcaatgaaagcagacaaaaaagcttcaccaacaac |
303 |
Q |
| |
|
||||||| |||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
4246001 |
aaggacagcttcaaggaaagcagacagaaaagcttcaccaacaac |
4245957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 172; Significance: 3e-92; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 34 - 301
Target Start/End: Complemental strand, 41932662 - 41932395
Alignment:
| Q |
34 |
agcagctttggtagaaatgtggtcgagaagatcatcagcaaaataaacagcatctatgagatcatcaagccatttgttaacagcagagtctttgaactgt |
133 |
Q |
| |
|
||||||||| ||||| ||||| || | || |||||||||| ||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41932662 |
agcagctttagtagagatgtgatccaaaatgtcatcagcaacatagacagcatctttgagatcatcgagccatttgttaacagcagagtctttgaactgt |
41932563 |
T |
|
| Q |
134 |
ttctgttcagtatcattaagcacagcttcaacagcataaagagtgttcttcaacctttggatcaaattgacggcaactttcttcccactgatcaagtcaa |
233 |
Q |
| |
|
|||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
41932562 |
ttctgttcagcatcattcaagacagcttcaacagcataaagagtgttcttcaacctttggatcaaattgacgtcaactttcttcccacgtatcaagtcaa |
41932463 |
T |
|
| Q |
234 |
caacctcaggagaagaaagcttgtcaaggacaacttcaatgaaagcagacaaaaaagcttcaccaaca |
301 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||| |||| ||| |||||||||||| |
|
|
| T |
41932462 |
taacctcaggagaagcaagcctgtcaaggacaacttcaatgaaagctgacagaaatgcttcaccaaca |
41932395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 33549369 - 33549300
Alignment:
| Q |
211 |
tttcttcccactgatcaagtcaacaacctcaggagaagaaagcttgtcaaggacaacttcaatgaaagca |
280 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||| ||| |||||||||||||| ||||||||||| |
|
|
| T |
33549369 |
tttcttcccacggatcaagtcaacaacctcaagagaagtaagtatgtcaaggacaactccaatgaaagca |
33549300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 33354035 - 33354104
Alignment:
| Q |
211 |
tttcttcccactgatcaagtcaacaacctcaggagaagaaagcttgtcaaggacaacttcaatgaaagca |
280 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||| || |||||||||||||| ||||||||||| |
|
|
| T |
33354035 |
tttcttcccacggatcaagtcaacaacctcaagagaagtgagtatgtcaaggacaactccaatgaaagca |
33354104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 38 - 249
Target Start/End: Original strand, 34803278 - 34803489
Alignment:
| Q |
38 |
gctttggtagaaatgtggtcgagaagatcatcagcaaaataaacagcatctatgagatcatcaagccatttgttaacagcagagtctttgaactgtttct |
137 |
Q |
| |
|
||||| ||||||||||| || | ||| |||||||| | ||||||||| ||| |||| ||||| ||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
34803278 |
gctttagtagaaatgtgatccaaaaggtcatcagctacataaacagcgtctttgaggtcatcgagccagttgttaacagcagagtctttgatctgtttct |
34803377 |
T |
|
| Q |
138 |
gttcagtatcattaagcacagcttcaacagcataaagagtgttcttcaacctttggatcaaattgacggcaactttcttcccactgatcaagtcaacaac |
237 |
Q |
| |
|
||| | ||||| ||| |||||||| || ||||| |||| |||||||||| ||| | ||||||||| |||| | |||||||| |||||| |||| || |
|
|
| T |
34803378 |
attccgcatcataaagaacagcttctactgcatatggagtattcttcaaccgttgtaccaaattgacatcaacctgcttcccacggatcaattcaagaat |
34803477 |
T |
|
| Q |
238 |
ctcaggagaaga |
249 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
34803478 |
ctgaggagaaga |
34803489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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