View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8903_low_26 (Length: 494)
Name: NF8903_low_26
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 11 - 483
Target Start/End: Original strand, 1123794 - 1124266
Alignment:
| Q |
11 |
atggacatcatgaggccatttgcagaatctgttttgagtgggtgagtcatttgnnnnnnnnnnnnnncttnnnnnnncaaattattagtatcttcttcat |
110 |
Q |
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| T |
1123794 |
atggacataatgaagccatttgcagaatctgttttgagtgggtgagtcatttgttttttctttttttcttaaaaaaacaaattattagtatcttcttcat |
1123893 |
T |
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| Q |
111 |
tgcttgtttcacctatggctgacatgaggtggacttcccaggtttattaatagaggaccatcagtaaatgatagatgggtttttgattccccagtccatt |
210 |
Q |
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| T |
1123894 |
tgcttgtttcacctatggctgacatgaggttgacttcccaggtttattaatagaggaccatcagtaaatgatagatgggtttttgattccccagtccatt |
1123993 |
T |
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| Q |
211 |
ctaacgttgaagctaagctgaggcaacttttaattgagctggcaaataatgataaaatacttggaatccaggtgcatgtgacttttgttttcctaatgcg |
310 |
Q |
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| T |
1123994 |
ctaacgttgaagctaagctgaggcaacttttaattgagctggcaaataatgataaaatacttggaatccaggtgcatgtgacttttgttttcctaatgcg |
1124093 |
T |
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| Q |
311 |
tttataattattaattacctttccttatgaccaccggctaggtttttctacgctagactacaccagggttgtatatcaggaatttacttatatgatttgg |
410 |
Q |
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| T |
1124094 |
tttataattattaattacctttccttatgaccaccggctaggtttttctacactagactacaccagggttgtatatcaggaatttacttatatgatttgg |
1124193 |
T |
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| Q |
411 |
ttgaaaattatgaaagtcattaagtatttcagattttcacatataatgtagctgccattgcatttgatgtcca |
483 |
Q |
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| T |
1124194 |
ttgaaaattatgaaagtcattaagtatttcagattttcacatataatgtagctgccattgcatttgatgtcca |
1124266 |
T |
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