View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8903_low_27 (Length: 474)
Name: NF8903_low_27
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 15 - 455
Target Start/End: Complemental strand, 50170101 - 50169664
Alignment:
| Q |
15 |
gacatcatgtgttggatacatgatctcaatcgaagctattcaaaggtaagatgcaggagccttccattttcataccattgactatcaatgaagtggtagc |
114 |
Q |
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| T |
50170101 |
gacatcatgtgttggatacatgatctcaatcgaagctattcaaaggtaagatgcaggagccttccattttcataccattgactatcaatgaagtggtagc |
50170002 |
T |
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| Q |
115 |
aaatttacagcatgtgacagtgttaagagtccagaagaggaga--actcaagtacttattcaacgaagtggcagaagctagatggccggaggattatttt |
212 |
Q |
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| T |
50170001 |
aaatttacagcatgtgacagtgtta-gagtccagaagaggagagaactcaagtacttattcaacgaagtggcagaagctagatggccggaggattatttt |
50169903 |
T |
|
| Q |
213 |
tcgatagctattatgatccaaaatagtaagtgacaattgacaataaaaaccaatgaagcaaagagtgccaaatagagatattctctaagagaaaatattc |
312 |
Q |
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| T |
50169902 |
tcgatagctattatgatccaaaatagtaagtgacaattgacaataaaaaccaatgaagcaaagagtgccaaatagagatattctctaagagaaaatattc |
50169803 |
T |
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| Q |
313 |
tttagactgtgcgtaaatagaacaattgatggagattctctttctctctttgccattctagcttgatttctaacgtaacgtattcccaccgtgatttcta |
412 |
Q |
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| T |
50169802 |
tttagactgtgcgtaaatagaacaattgatggagattctctttctctctttgccattctagcttgatttctaacgta----attcccaccgtgatttcta |
50169707 |
T |
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| Q |
413 |
agaagctagaaaaccaagcttatgcgttaccgtgatttctaca |
455 |
Q |
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| T |
50169706 |
agaagctagaaaaccaagcttatgcgttgtcgtgatttctaca |
50169664 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 444
Target Start/End: Complemental strand, 19352258 - 19352214
Alignment:
| Q |
400 |
accgtgatttctaagaagctagaaaaccaagcttatgcgttaccg |
444 |
Q |
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| T |
19352258 |
accgtgatttttaagaagctacaaaaccaagcttatgtgttaccg |
19352214 |
T |
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