View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8903_low_29 (Length: 462)
Name: NF8903_low_29
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_29 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 3 - 426
Target Start/End: Original strand, 49825101 - 49825515
Alignment:
| Q |
3 |
agatggacatcatcatacacccgcttcacagcttagttacgccatccatgcttcaagttgccatcagttatctcaactttaaacaacannnnnnnngtct |
102 |
Q |
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| T |
49825101 |
agatcgacatcatcagacacccgcttcacaacttagttacgccatccatgcttcaagttgccatcagttatctcgactttaaacaacattttttt-gtct |
49825199 |
T |
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| Q |
103 |
atgaacaaatccagatcagcaggatattcgtcattgtaatgttgtgaagagtcacaaattgattcatcagatgtccttttgaccgcatagttgcgccaat |
202 |
Q |
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| T |
49825200 |
atgaacaaatccagatcagcaggatattcgccattgtaatgttgtgaagagtcacaaattgattcatcagatgtccttttgacagcatagttgcgccaat |
49825299 |
T |
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| Q |
203 |
tatgcattaagttcccatccgtaattccaaccttaaatagcatttgttttccaacaacaatatcaaattcatttggatactcgctcgcttgagggtttac |
302 |
Q |
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| T |
49825300 |
tatgcattaagttcccatccgtaatttcaaccttaaatagcatttgttttccaacaaaaatatccaactcattgggata----ctcgcttgagggtttac |
49825395 |
T |
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| Q |
303 |
cctgatcaaatgaaacgcactccaaattaccaacatgcataaaaatacgatcgtatcacaatatnnnnnnnngatataaccaaagtgatcataatttacc |
402 |
Q |
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| T |
49825396 |
cctgatcaaataaaacgcactccaaattaataacatgcataaaaatacaatcatatcacaata----aaaaagctataaccaaagtgatcataatttacc |
49825491 |
T |
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| Q |
403 |
tgactgtttgcctcaatcaaatct |
426 |
Q |
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| T |
49825492 |
tgactgtttgcctcaatcaaatct |
49825515 |
T |
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Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 175 - 259
Target Start/End: Complemental strand, 232658 - 232573
Alignment:
| Q |
175 |
gtccttttgaccgcatagttgcgccaat-tatgcattaagttcccatccgtaattccaaccttaaatagcatttgttttccaacaa |
259 |
Q |
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| T |
232658 |
gtccttttgacagaataattgcgccaagctctgcatcaagttcccatccgtaatttcaaccttaaacaacattttctttccaacaa |
232573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 14584717 - 14584802
Alignment:
| Q |
175 |
gtccttttgaccgcatagttgcgccaat-tatgcattaagttcccatccgtaattccaaccttaaatagcatttgttttccaacaa |
259 |
Q |
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| T |
14584717 |
gtccttttgacagaataattgcgccaagctctgcatcaagttcccatccgtaatttcaaccttaaacaacattttctttccaacaa |
14584802 |
T |
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