View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8903_low_30 (Length: 462)

Name: NF8903_low_30
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8903_low_30
NF8903_low_30
[»] chr7 (24 HSPs)
chr7 (17-444)||(35307816-35308250)
chr7 (17-77)||(48661599-48661659)
chr7 (17-77)||(21821786-21821846)
chr7 (17-77)||(31892131-31892191)
chr7 (41-88)||(33996344-33996391)
chr7 (39-77)||(23796228-23796266)
chr7 (16-82)||(26239955-26240021)
chr7 (35-77)||(31892385-31892427)
chr7 (37-94)||(2544474-2544531)
chr7 (17-74)||(4268034-4268091)
chr7 (37-94)||(25620136-25620193)
chr7 (37-94)||(36277253-36277310)
chr7 (29-94)||(43075337-43075402)
chr7 (29-94)||(43085564-43085629)
chr7 (29-94)||(43089235-43089300)
chr7 (37-94)||(48243088-48243145)
chr7 (37-94)||(48243464-48243521)
chr7 (37-77)||(4454776-4454816)
chr7 (26-94)||(10882032-10882100)
chr7 (17-65)||(43688215-43688263)
chr7 (17-77)||(44874390-44874450)
chr7 (291-339)||(46243344-46243391)
chr7 (17-77)||(47710423-47710483)
chr7 (17-77)||(47722079-47722139)
[»] chr8 (21 HSPs)
chr8 (17-94)||(24532448-24532525)
chr8 (17-95)||(5931975-5932053)
chr8 (17-79)||(39052579-39052641)
chr8 (37-94)||(7267492-7267549)
chr8 (17-94)||(39052956-39053033)
chr8 (17-77)||(7729921-7729981)
chr8 (37-77)||(8084127-8084167)
chr8 (37-77)||(28069401-28069441)
chr8 (23-94)||(38447454-38447525)
chr8 (23-65)||(20301487-20301529)
chr8 (23-65)||(21088119-21088161)
chr8 (25-94)||(4828281-4828350)
chr8 (17-94)||(10449980-10450057)
chr8 (254-339)||(19733064-19733148)
chr8 (313-346)||(28569977-28570010)
chr8 (313-346)||(28577570-28577603)
chr8 (17-94)||(36917466-36917543)
chr8 (254-339)||(38289230-38289314)
chr8 (37-77)||(7669419-7669459)
chr8 (37-77)||(7669641-7669681)
chr8 (37-69)||(15042722-15042754)
[»] chr3 (19 HSPs)
chr3 (249-342)||(38414894-38414986)
chr3 (17-94)||(20327641-20327718)
chr3 (17-91)||(30179738-30179812)
chr3 (254-339)||(50381730-50381814)
chr3 (37-77)||(20303108-20303148)
chr3 (17-77)||(31317446-31317506)
chr3 (17-77)||(54368702-54368762)
chr3 (25-94)||(472087-472156)
chr3 (37-94)||(1800215-1800272)
chr3 (254-339)||(11483629-11483713)
chr3 (37-94)||(16926976-16927033)
chr3 (37-74)||(17001468-17001505)
chr3 (254-335)||(32421364-32421444)
chr3 (17-94)||(35038221-35038298)
chr3 (17-94)||(38791477-38791554)
chr3 (17-77)||(16239571-16239631)
chr3 (17-65)||(35038484-35038532)
chr3 (37-77)||(39269331-39269371)
chr3 (17-77)||(54368496-54368556)
[»] chr4 (34 HSPs)
chr4 (17-77)||(6218419-6218479)
chr4 (19-77)||(11036555-11036613)
chr4 (17-77)||(35788639-35788699)
chr4 (17-75)||(9279207-9279265)
chr4 (273-339)||(56555583-56555648)
chr4 (17-94)||(18528244-18528321)
chr4 (17-94)||(22827518-22827595)
chr4 (17-94)||(28245553-28245630)
chr4 (37-94)||(35788894-35788951)
chr4 (37-94)||(52559567-52559624)
chr4 (17-77)||(11036790-11036850)
chr4 (17-77)||(27634125-27634185)
chr4 (255-339)||(29889773-29889856)
chr4 (17-77)||(35796786-35796846)
chr4 (17-77)||(39902607-39902667)
chr4 (26-77)||(35797021-35797072)
chr4 (265-339)||(15334788-15334862)
chr4 (249-339)||(38690677-38690766)
chr4 (37-94)||(7892548-7892605)
chr4 (37-94)||(12869056-12869113)
chr4 (254-339)||(16556467-16556551)
chr4 (17-94)||(22231100-22231177)
chr4 (17-94)||(22845474-22845551)
chr4 (37-94)||(28246112-28246169)
chr4 (37-94)||(35175035-35175092)
chr4 (37-94)||(53814956-53815013)
chr4 (17-77)||(400609-400669)
chr4 (25-77)||(5846367-5846419)
chr4 (17-77)||(6218184-6218244)
chr4 (17-77)||(27634560-27634620)
chr4 (17-65)||(31254463-31254511)
chr4 (37-77)||(35645809-35645849)
chr4 (17-77)||(44118903-44118963)
chr4 (17-77)||(50543611-50543671)
[»] chr6 (16 HSPs)
chr6 (17-95)||(17147686-17147764)
chr6 (37-94)||(9705020-9705077)
chr6 (37-77)||(3680246-3680286)
chr6 (17-77)||(24554097-24554157)
chr6 (19-77)||(12199729-12199787)
chr6 (17-63)||(12319732-12319778)
chr6 (37-94)||(4868604-4868661)
chr6 (37-94)||(6054403-6054460)
chr6 (37-74)||(6542990-6543027)
chr6 (20-65)||(7638646-7638691)
chr6 (17-94)||(9705234-9705311)
chr6 (37-94)||(28867984-28868041)
chr6 (17-94)||(33494519-33494596)
chr6 (37-77)||(6237746-6237786)
chr6 (37-77)||(12199849-12199889)
chr6 (17-65)||(31961158-31961206)
[»] chr5 (30 HSPs)
chr5 (249-339)||(15680896-15680985)
chr5 (17-64)||(9368810-9368857)
chr5 (23-77)||(11895960-11896013)
chr5 (23-77)||(17352479-17352533)
chr5 (17-94)||(95293-95370)
chr5 (17-94)||(9368575-9368652)
chr5 (37-77)||(37782094-37782134)
chr5 (254-338)||(41836056-41836139)
chr5 (19-82)||(17017130-17017193)
chr5 (17-94)||(8081140-8081218)
chr5 (23-77)||(33337282-33337336)
chr5 (249-339)||(34729483-34729571)
chr5 (37-94)||(2063761-2063817)
chr5 (17-94)||(18333492-18333569)
chr5 (40-77)||(21306890-21306927)
chr5 (40-77)||(21314728-21314765)
chr5 (37-94)||(24528540-24528597)
chr5 (37-94)||(41666784-41666841)
chr5 (37-94)||(41667020-41667077)
chr5 (37-77)||(2061982-2062022)
chr5 (37-77)||(13296673-13296713)
chr5 (37-77)||(15438987-15439027)
chr5 (37-65)||(15439223-15439251)
chr5 (37-77)||(15480322-15480362)
chr5 (17-77)||(24346545-24346605)
chr5 (37-77)||(24531599-24531639)
chr5 (16-88)||(29909520-29909592)
chr5 (17-77)||(31181055-31181115)
chr5 (37-77)||(32908762-32908802)
chr5 (17-77)||(38731647-38731707)
[»] chr1 (22 HSPs)
chr1 (17-95)||(16163147-16163225)
chr1 (17-94)||(17452706-17452783)
chr1 (36-77)||(38668124-38668165)
chr1 (17-94)||(39348379-39348456)
chr1 (17-94)||(40079132-40079209)
chr1 (37-94)||(17452855-17452912)
chr1 (17-94)||(25145747-25145824)
chr1 (17-77)||(4112584-4112644)
chr1 (17-77)||(15986377-15986437)
chr1 (37-77)||(26173268-26173308)
chr1 (17-65)||(35772244-35772292)
chr1 (17-77)||(52650815-52650875)
chr1 (256-339)||(19424064-19424146)
chr1 (37-88)||(38668360-38668411)
chr1 (265-339)||(25031492-25031565)
chr1 (37-94)||(4113033-4113090)
chr1 (37-94)||(26865385-26865442)
chr1 (37-94)||(35892291-35892348)
chr1 (17-65)||(2859448-2859496)
chr1 (37-77)||(8870733-8870773)
chr1 (37-77)||(25713393-25713433)
chr1 (17-69)||(51460259-51460311)
[»] scaffold0092 (1 HSPs)
scaffold0092 (17-94)||(5635-5712)
[»] chr2 (23 HSPs)
chr2 (37-88)||(17854725-17854776)
chr2 (23-94)||(37840323-37840394)
chr2 (17-88)||(38629821-38629892)
chr2 (17-94)||(17719380-17719457)
chr2 (37-77)||(8424888-8424928)
chr2 (17-77)||(35418458-35418518)
chr2 (17-88)||(94053-94124)
chr2 (17-88)||(14927082-14927153)
chr2 (19-77)||(25082581-25082639)
chr2 (38-91)||(1926471-1926524)
chr2 (17-94)||(2029749-2029826)
chr2 (37-94)||(16419502-16419559)
chr2 (17-74)||(18607056-18607113)
chr2 (28-65)||(32356377-32356414)
chr2 (17-94)||(40379236-40379313)
chr2 (17-94)||(40379471-40379548)
chr2 (17-65)||(3738913-3738961)
chr2 (37-69)||(5711727-5711759)
chr2 (37-77)||(5851726-5851766)
chr2 (37-77)||(17525382-17525422)
chr2 (17-77)||(33606098-33606158)
chr2 (17-77)||(37812312-37812372)
chr2 (37-77)||(37812542-37812582)
[»] scaffold0692 (1 HSPs)
scaffold0692 (37-77)||(5798-5838)
[»] scaffold0334 (1 HSPs)
scaffold0334 (17-94)||(4456-4533)
[»] scaffold0129 (1 HSPs)
scaffold0129 (37-94)||(14303-14360)
[»] scaffold0083 (1 HSPs)
scaffold0083 (37-94)||(51236-51293)
[»] scaffold0047 (2 HSPs)
scaffold0047 (24-77)||(12868-12921)
scaffold0047 (37-77)||(12647-12687)
[»] scaffold0766 (1 HSPs)
scaffold0766 (37-77)||(6274-6314)


Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 444
Target Start/End: Complemental strand, 35308250 - 35307816
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggttaaattgattttggtatttttct 116  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  35308250 acatcagataggagatgtcatgacaatgtgtttataagtgggggcaatcatcacctcacaattcggttttgtagggttaaattgattttggtatttttct 35308151  T
Q  117 ctataattgattttatctagaagatatgatttactgttttgcctatccaatcgttatattattcaacttgtttttacataaatgtaattaattataaatc 216  Q
    ||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35308150 ctataattgattttatctagaagatataatttaatgctttgcctatccaatcgttatattattcaacttgtttttacatgaatgtaattaattataaatc 35308051  T
Q  217 gttttattataaactaaattttaactaaaatacactcggtaaggaatgatgcataatatatgcaggagtcaggattcgaatttcgaacaccccactttat 316  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  35308050 gttttattataaactaaattttaactaaaatacacttggtaaggaataatgcataatatatgcaggactcgggattcgaatttcgaacaccccactttat 35307951  T
Q  317 tcacatttaaggtgaatttctctggctgttggactattt-------nnnnnnnnnctaaaataagctcaatcaaaattagtagtaattattatctatcaa 409  Q
    |||| |||||||||||||||||| |    ||||||||||                ||||||||||||||||||||||||| |||||||||||||||||||    
T  35307950 tcacctttaaggtgaatttctctagtcactggactatttaaaaaaaaaaaaaaaactaaaataagctcaatcaaaattaggagtaattattatctatcaa 35307851  T
Q  410 acacaagctatagaacaagttagaatggaaagaga 444  Q
    |||||||||||||||||||||||||||||||||||    
T  35307850 acacaagctatagaacaagttagaatggaaagaga 35307816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 48661659 - 48661599
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||||||||||||||| | |||||||||||||||| |||||||||||| ||| |||||||    
T  48661659 acatcagataggagatgacctgacaatgtatttataggtgggggcaatcctcacctcacaa 48661599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 21821786 - 21821846
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    |||||||||| |||||| | ||||||| | || |||||||||||||||| |||||||||||    
T  21821786 acatcagatatgagatggcctgacaatatgttaataagtgggggcaatcttcatctcacaa 21821846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 31892131 - 31892191
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||| ||||||| ||  ||||||||||||||||||||||||| ||||| ||| |||||||    
T  31892131 acatcggataggatatagcatgacaatgtatttataagtggggacaatcctcacctcacaa 31892191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 33996391 - 33996344
Alignment:
Q  41 aatgtatttataagtgggggcaatcatcatctcacaattcggctttgt 88  Q
    ||||||||||||||||||||||||| ||| ||||||| |||| |||||    
T  33996391 aatgtatttataagtgggggcaatcttcacctcacaagtcggttttgt 33996344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 77
Target Start/End: Complemental strand, 23796266 - 23796228
Alignment:
Q  39 acaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||||| ||||||||||||||||||||||| |||||||    
T  23796266 acaatgtgtttataagtgggggcaatcatcacctcacaa 23796228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 26240021 - 26239955
Alignment:
Q  16 gacatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcgg 82  Q
    |||||| ||||||| |||   ||||||||| ||||||||||||||||||| ||| ||||||| ||||    
T  26240021 gacatcggataggacatggtctgacaatgtgtttataagtgggggcaatcctcacctcacaagtcgg 26239955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 31892385 - 31892427
Alignment:
Q  35 catgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||||||||||||||||||||||| ||||| ||| |||||||    
T  31892385 catgacaatgtatttataagtggggacaatcttcacctcacaa 31892427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 2544531 - 2544474
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||| | ||||||||||||||||||| ||| ||||||| |||| ||||| |||||    
T  2544531 tgacaatttgtttataagtgggggcaatcctcacctcacaagtcggttttgtggggtt 2544474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 4268034 - 4268091
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctca 74  Q
    ||||||| |||||| || | ||||||| | ||||||||||||||||||||||| ||||    
T  4268034 acatcagttaggagttggcctgacaatttgtttataagtgggggcaatcatcacctca 4268091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 25620136 - 25620193
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||||| ||||||||||||||||||| ||| |||||||  ||| ||||| |||||    
T  25620136 tgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggtt 25620193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 36277310 - 36277253
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||||| ||||||||||||||||||| ||| ||||||| |||  ||||| |||||    
T  36277310 tgacaatgtgtttataagtgggggcaatcctcacctcacaagtcgattttgtggggtt 36277253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 43075402 - 43075337
Alignment:
Q  29 agatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||| |||||||| || ||||||||||||||||||| ||| ||||||| | || ||||| |||||    
T  43075402 agatgacatgacaacgtgtttataagtgggggcaatcctcacctcacaagttggttttgtggggtt 43075337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 43085629 - 43085564
Alignment:
Q  29 agatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||| |||||||| || ||||||||||||||||||| ||| ||||||| | || ||||| |||||    
T  43085629 agatgacatgacaacgtgtttataagtgggggcaatcctcacctcacaagttggttttgtggggtt 43085564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 43089300 - 43089235
Alignment:
Q  29 agatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||| |||||||| || ||||||||||||||||||| ||| ||||||| | || ||||| |||||    
T  43089300 agatgacatgacaacgtgtttataagtgggggcaatcctcacctcacaagttggttttgtggggtt 43089235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 48243145 - 48243088
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||||| ||||||||||||||||||| ||| |||||||  ||| ||||| |||||    
T  48243145 tgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggtt 48243088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 48243521 - 48243464
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||||| ||||||||||||||||||| |||||| ||||  ||| ||||| |||||    
T  48243521 tgacaatgtgtttataagtgggggcaatcctcatcttacaagccggttttgtggggtt 48243464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 4454776 - 4454816
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||||||| ||||||||||||||||||| ||| |||||||    
T  4454776 tgacaatgtgtttataagtgggggcaatcctcacctcacaa 4454816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 10882100 - 10882032
Alignment:
Q  26 aggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||| || ||||||||| | ||||||||||||||||||| ||| |||||||  ||| ||||| |||||    
T  10882100 aggagttggcatgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtggggtt 10882032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 43688263 - 43688215
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatc 65  Q
    ||||| ||||||| ||| | ||||||||| |||||||||||||||||||    
T  43688263 acatcggataggacatggcctgacaatgtgtttataagtgggggcaatc 43688215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 44874450 - 44874390
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||| ||||||||||  | ||||||||| |||||||||||||| |||| ||| |||||||    
T  44874450 acatcggataggagataacctgacaatgtgtttataagtgggggaaatcctcacctcacaa 44874390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 46243344 - 46243391
Alignment:
Q  291 ttcgaatttcgaacaccccactttattcacatttaaggtgaatttctct 339  Q
    |||||| | |||||||||||||| |||||| ||||||||||||||||||    
T  46243344 ttcgaactccgaacaccccactt-attcacctttaaggtgaatttctct 46243391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 47710423 - 47710483
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||| |||||| |||| | | ||||||| ||||||||||||||||||| ||| |||||||    
T  47710423 acatcggataggtgatggccttacaatgtgtttataagtgggggcaatcctcacctcacaa 47710483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 47722079 - 47722139
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||| |||||| |||| | | ||||||| ||||||||||||||||||| ||| |||||||    
T  47722079 acatcggataggtgatggccttacaatgtgtttataagtgggggcaatcctcacctcacaa 47722139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 24532525 - 24532448
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||| ||||||||||| | ||||||||| ||||||||||||||||||||||| |||||||  ||| ||||| |||||    
T  24532525 acatcggataggagatggcctgacaatgtgtttataagtgggggcaatcatcacctcacaagccggttttgtggggtt 24532448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 5932053 - 5931975
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtta 95  Q
    ||||||||||| | ||| | ||||||||| ||||||||||||||||||| ||| |||||||  ||| ||||| ||||||    
T  5932053 acatcagatagtacatggcctgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggtta 5931975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 39052641 - 39052579
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaatt 79  Q
    |||||||||||| |||| | ||||||||| ||||||||||||||||||| ||| || ||||||    
T  39052641 acatcagataggtgatggcctgacaatgtgtttataagtgggggcaatcctcacctaacaatt 39052579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 7267549 - 7267492
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||| | ||||||||||||||||||||||| |||||||  ||| |||||||||||    
T  7267549 tgacaatttgtttataagtgggggcaatcatcacctcacaagccggttttgtagggtt 7267492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 39053033 - 39052956
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||| |||||| |||| | ||||||||| ||||||||||||||||||| ||| |||||||  ||| ||||| |||||    
T  39053033 acatcggataggtgatggcctgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggtt 39052956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 7729921 - 7729981
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    |||||||||| |||||| | |||| |||| ||||||||||||||||||| ||| |||||||    
T  7729921 acatcagatatgagatggcctgaccatgtgtttataagtgggggcaatcctcacctcacaa 7729981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 8084127 - 8084167
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||||||||||||||||||||||||||| ||| |||||||    
T  8084127 tgacaatgtatttataagtgggggcaatcctcacctcacaa 8084167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 28069441 - 28069401
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||||||||||||||||||||||||||| ||| |||||||    
T  28069441 tgacaatgtatttataagtgggggcaatcctcacctcacaa 28069401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 38447525 - 38447454
Alignment:
Q  23 gataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    |||| |||||| | ||||||||| ||||||||||||||||||| ||| |||||||  ||| ||||| |||||    
T  38447525 gataagagatggcctgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggtt 38447454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 20301487 - 20301529
Alignment:
Q  23 gataggagatgccatgacaatgtatttataagtgggggcaatc 65  Q
    |||| |||||| ||||||||||| |||||||||||||||||||    
T  20301487 gatatgagatggcatgacaatgtgtttataagtgggggcaatc 20301529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 21088119 - 21088161
Alignment:
Q  23 gataggagatgccatgacaatgtatttataagtgggggcaatc 65  Q
    |||| |||||| ||||||||||| |||||||||||||||||||    
T  21088119 gatatgagatggcatgacaatgtgtttataagtgggggcaatc 21088161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 4828281 - 4828350
Alignment:
Q  25 taggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    |||||| || ||||||||| | ||||||||||||||||||| ||| |||||||  ||| ||||| |||||    
T  4828281 taggagttggcatgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtggggtt 4828350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 10449980 - 10450057
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||| ||||||| ||| | ||||||||| |||||||||| |||||||| ||| |||| ||  ||| |||||||||||    
T  10449980 acatcggataggacatggcctgacaatgtgtttataagtgtgggcaatcctcacctcagaagccggttttgtagggtt 10450057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 339
Target Start/End: Complemental strand, 19733148 - 19733064
Alignment:
Q  254 ggtaaggaatgatgcataatatatgcaggagtcaggattcgaatttcgaacaccccactttattcacatttaaggtgaatttctct 339  Q
    ||||||| || |||||||||||||||||| ||| || |||||||  |||||| || |  |||||||  ||||||||||||||||||    
T  19733148 ggtaagggataatgcataatatatgcaggggtcggggttcgaatcccgaaca-cctaaattattcatctttaaggtgaatttctct 19733064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 346
Target Start/End: Complemental strand, 28570010 - 28569977
Alignment:
Q  313 ttattcacatttaaggtgaatttctctggctgtt 346  Q
    |||||||||||||| |||||||||||||||||||    
T  28570010 ttattcacatttaaagtgaatttctctggctgtt 28569977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 346
Target Start/End: Complemental strand, 28577603 - 28577570
Alignment:
Q  313 ttattcacatttaaggtgaatttctctggctgtt 346  Q
    |||||||||||||| |||||||||||||||||||    
T  28577603 ttattcacatttaaagtgaatttctctggctgtt 28577570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 36917543 - 36917466
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||||||||  ||| | |||||||||||||||||||||||| |||| |||  |||||| || | ||||| |||||    
T  36917543 acatcagataggtaatggcctgacaatgtatttataagtgggggtaatcctcacatcacaagtcagttttgtggggtt 36917466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 339
Target Start/End: Complemental strand, 38289314 - 38289230
Alignment:
Q  254 ggtaaggaatgatgcataatatatgcaggagtcaggattcgaatttcgaacaccccactttattcacatttaaggtgaatttctct 339  Q
    ||||||| || ||||| ||||| |||||| ||| || ||||||  || |||||||||| |||||||  ||||||||||||||||||    
T  38289314 ggtaagggataatgcacaatatgtgcaggggtcggggttcgaacctcaaacaccccac-ttattcatctttaaggtgaatttctct 38289230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 7669419 - 7669459
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    |||||| || |||||||||||||||||||||||||| ||||    
T  7669419 tgacaacgtgtttataagtgggggcaatcatcatcttacaa 7669459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 7669641 - 7669681
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||||||| ||||||||||||||||||| ||| |||||||    
T  7669641 tgacaatgtgtttataagtgggggcaatcctcacctcacaa 7669681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 15042754 - 15042722
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatca 69  Q
    ||||||||| |||||||||||||||||||||||    
T  15042754 tgacaatgtgtttataagtgggggcaatcatca 15042722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 249 - 342
Target Start/End: Original strand, 38414894 - 38414986
Alignment:
Q  249 cactcggtaaggaatgatgcataatatatgcaggagtcaggattcgaatttcgaacaccccactttattcacatttaaggtgaatttctctggc 342  Q
    |||| ||||||| || ||||||| |||||||||| |||||| || ||| |  ||||||||||||| |||||| |||||||||||||||||||||    
T  38414894 cacttggtaagggataatgcatattatatgcaggggtcagggtttgaactctgaacaccccactt-attcacctttaaggtgaatttctctggc 38414986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 20327718 - 20327641
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||| ||||||| ||| | ||||||||||||||||||||||||||||| ||| |||||||  ||| ||||| |||||    
T  20327718 acatcggataggacatggcctgacaatgtatttataagtgggggcaatcctcacctcacaagccggttttgtggggtt 20327641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 30179812 - 30179738
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagg 91  Q
    |||||||||| |||||| | ||||||||| |||||||||||||| |||| ||| ||||||| || | ||||||||    
T  30179812 acatcagataagagatgacctgacaatgtgtttataagtgggggtaatcctcacctcacaagtcagttttgtagg 30179738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 254 - 339
Target Start/End: Original strand, 50381730 - 50381814
Alignment:
Q  254 ggtaaggaatgatgcataatatatgcaggagtcaggattcgaatttcgaacaccccactttattcacatttaaggtgaatttctct 339  Q
    ||||||| || ||||| |||||||||||| ||| || |||||||  || ||||||||| |||||||  ||||||||||||||||||    
T  50381730 ggtaagggataatgcacaatatatgcaggggtcggggttcgaatcccggacaccccac-ttattcatctttaaggtgaatttctct 50381814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 20303148 - 20303108
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||||||||||||||||||||||||||| ||| |||||||    
T  20303148 tgacaatgtatttataagtgggggcaatcctcacctcacaa 20303108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 31317446 - 31317506
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||| ||||||| ||| ||||||||||| |||||||||||||  |||||||| |||||||    
T  31317446 acatcggataggacatgacatgacaatgtgtttataagtggggaaaatcatcacctcacaa 31317506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 54368702 - 54368762
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||| ||||| ||||| | ||||||||||||||||||||| ||||||| ||| |||||||    
T  54368702 acatcggatagaagatggcctgacaatgtatttataagtggtggcaatcctcacctcacaa 54368762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 472156 - 472087
Alignment:
Q  25 taggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||||| | ||||||||| ||||||||||||||||||| | | |||||||  ||| ||||| |||||    
T  472156 taggagatggcttgacaatgtgtttataagtgggggcaatccttacctcacaagccggttttgtggggtt 472087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 1800215 - 1800272
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||| ||||||||||||||||||||||| ||| |||||||  ||| ||||| |||||    
T  1800215 tgacagtgtatttataagtgggggcaatcctcacctcacaaaccggttttgtggggtt 1800272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 339
Target Start/End: Original strand, 11483629 - 11483713
Alignment:
Q  254 ggtaaggaatgatgcataatatatgcaggagtcaggattcgaatttcgaacaccccactttattcacatttaaggtgaatttctct 339  Q
    ||||||| || ||||| ||||| |||||| | |||| |||||| | || ||||||||| |||||||  ||||||||||||||||||    
T  11483629 ggtaagggataatgcaaaatatgtgcaggggccagggttcgaactccggacaccccac-ttattcatctttaaggtgaatttctct 11483713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 16927033 - 16926976
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||||| |||||||||||||| |||| |||||||||||  ||| ||||| |||||    
T  16927033 tgacaatgtgtttataagtgggggtaatcctcatctcacaagccggttttgtggggtt 16926976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 17001505 - 17001468
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctca 74  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  17001505 tgacaatgtgtttataagtgggggcaatcatcacctca 17001468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 335
Target Start/End: Original strand, 32421364 - 32421444
Alignment:
Q  254 ggtaaggaatgatgcataatatatgcaggagtcaggattcgaatttcgaacaccccactttattcacatttaaggtgaattt 335  Q
    ||||||| || |||||||||||||||||| ||| || ||||||  |||||| |||||| |||||||  |||||| |||||||    
T  32421364 ggtaagggataatgcataatatatgcaggggtcggggttcgaacctcgaactccccac-ttattcatctttaagatgaattt 32421444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 35038298 - 35038221
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||| |||||| |||| | ||||||||| |||||||||||||| |||| ||| |||||||  ||| ||||| |||||    
T  35038298 acatcggataggtgatggcctgacaatgtgtttataagtgggggaaatcctcacctcacaagccggttttgtggggtt 35038221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 38791554 - 38791477
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||| |||||||||||   |||||||||||||||||||| || ||||| ||| ||||||| |||  ||||| |||||    
T  38791554 acatcggataggagatggtctgacaatgtatttataagtgaggacaatcctcacctcacaaatcgattttgtggggtt 38791477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 16239571 - 16239631
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||| ||||||| ||| | ||||||||| ||||||||||||||||| | ||| |||||||    
T  16239571 acatcggataggacatggcctgacaatgtgtttataagtgggggcaaacctcacctcacaa 16239631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 35038532 - 35038484
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatc 65  Q
    ||||| |||||| |||| | ||||||||| |||||||||||||||||||    
T  35038532 acatcggataggtgatggcctgacaatgtgtttataagtgggggcaatc 35038484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 39269331 - 39269371
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||||||| ||||||||||||||||||| ||| |||||||    
T  39269331 tgacaatgtgtttataagtgggggcaatcctcacctcacaa 39269371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 54368496 - 54368556
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||| ||||| ||||| | ||| ||||| ||||||||||||||||||| ||| |||||||    
T  54368496 acatccgatagaagatggcctgaaaatgtgtttataagtgggggcaatcctcacctcacaa 54368556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 6218419 - 6218479
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||||||||||||||| | | ||||||| ||||||||||||||||||||||| |||||||    
T  6218419 acatcagataggagatgacctaacaatgtgtttataagtgggggcaatcatcacctcacaa 6218479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 11036613 - 11036555
Alignment:
Q  19 atcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    |||||||||| |||| ||||||||||| ||||||||| ||||||||||||| |||||||    
T  11036613 atcagataggtgatgacatgacaatgtgtttataagttggggcaatcatcacctcacaa 11036555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 35788639 - 35788699
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||||||||||| ||| | ||||||||| ||||||||||||||||||| ||| |||||||    
T  35788639 acatcagataggacatggcctgacaatgtgtttataagtgggggcaatcctcacctcacaa 35788699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 9279207 - 9279265
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcac 75  Q
    ||||| |||||| |||| | ||||||||| ||||||||||||||||||||||| |||||    
T  9279207 acatcggataggtgatggcctgacaatgtgtttataagtgggggcaatcatcacctcac 9279265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 339
Target Start/End: Original strand, 56555583 - 56555648
Alignment:
Q  273 tatatgcaggagtcaggattcgaatttcgaacaccccactttattcacatttaaggtgaatttctct 339  Q
    |||||||||| ||| || ||||||  ||||||||||||||| |||||| ||||||||||||||||||    
T  56555583 tatatgcaggggtcggggttcgaacctcgaacaccccactt-attcacctttaaggtgaatttctct 56555648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 18528321 - 18528244
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    |||||| ||| |||||| |||| |||||| ||||||||||| ||||||| ||| ||||||| |||  |||||||||||    
T  18528321 acatcaaatacgagatggcatggcaatgtgtttataagtggcggcaatcctcacctcacaaatcgattttgtagggtt 18528244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 22827518 - 22827595
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||| ||||||||||| | |||||| || ||||||||||||||||||| ||| |||||||  ||| ||||| |||||    
T  22827518 acatcggataggagatggcctgacaacgtgtttataagtgggggcaatcctcacctcacaagccggttttgtcgggtt 22827595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 28245630 - 28245553
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||| |||||| |||| | ||||||||| ||||||||||||||||||| ||| |||||||  ||| ||||| |||||    
T  28245630 acatcggataggtgatggcctgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggtt 28245553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 35788894 - 35788951
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||||| ||||||||||||||||||| |||||||||||  ||| ||||| |||||    
T  35788894 tgacaatgtgtttataagtgggggcaatcctcatctcacaagccggttttgtggggtt 35788951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 52559567 - 52559624
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||||| ||||||||||||||||||||||| |||||||  ||| ||||| |||||    
T  52559567 tgacaatgtgtttataagtgggggcaatcatcacctcacaagccggttttgtggggtt 52559624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 11036850 - 11036790
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||| |||||| |||| | ||||||||| ||||||||||||||||||| ||| |||||||    
T  11036850 acatcggataggtgatggcctgacaatgtgtttataagtgggggcaatcctcacctcacaa 11036790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 27634185 - 27634125
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||| ||||||| ||| | ||||||||| ||||||||||||||||||| ||| |||||||    
T  27634185 acatcggataggacatggcctgacaatgtgtttataagtgggggcaatcctcacctcacaa 27634125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 339
Target Start/End: Complemental strand, 29889856 - 29889773
Alignment:
Q  255 gtaaggaatgatgcataatatatgcaggagtcaggattcgaatttcgaacaccccactttattcacatttaaggtgaatttctct 339  Q
    |||||| || ||||||| |||||||||| | | || |||||| |||| |  ||||| ||||||||||||||||||||||||||||    
T  29889856 gtaagggataatgcatattatatgcaggggccggggttcgaacttcggatgcccca-tttattcacatttaaggtgaatttctct 29889773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 35796846 - 35796786
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||| || |||| ||| ||||||||||| ||||||||||||||||||| ||| |||||||    
T  35796846 acatcggacaggacatggcatgacaatgtgtttataagtgggggcaatcctcacctcacaa 35796786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 39902667 - 39902607
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||| ||||||| ||| | ||||||||| ||||||||||||||||||| ||| |||||||    
T  39902667 acatcggataggacatggcctgacaatgtgtttataagtgggggcaatcctcacctcacaa 39902607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 35797072 - 35797021
Alignment:
Q  26 aggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    |||||||| ||||||||| | ||||||||||||||||||| ||| |||||||    
T  35797072 aggagatgacatgacaatatgtttataagtgggggcaatcctcacctcacaa 35797021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 339
Target Start/End: Complemental strand, 15334862 - 15334788
Alignment:
Q  265 atgcataatatatgcaggagtcaggattcgaatttcgaacaccccactttattcacatttaaggtgaatttctct 339  Q
    |||||||||||||||||| | |||| || |||   || |||||||| ||||||||| |||| |||||||||||||    
T  15334862 atgcataatatatgcaggggccagggtttgaaccccggacaccccattttattcacctttatggtgaatttctct 15334788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 339
Target Start/End: Original strand, 38690677 - 38690766
Alignment:
Q  249 cactcggtaaggaatgatgcataatatatgcaggagtcaggattcgaatttcgaacaccccactttattcacatttaaggtgaatttctct 339  Q
    |||| ||||||| || ||||||| |||||||||| ||| || ||||||   || ||||||||| |||||| | ||||||||||||||||||    
T  38690677 cacttggtaagggataatgcatattatatgcaggggtcggggttcgaaccccggacaccccac-ttattctcctttaaggtgaatttctct 38690766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 7892548 - 7892605
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||||| ||||||||||| ||||||  |||||||||||| ||| ||||| |||||    
T  7892548 tgacaatgtgtttataagtggaggcaattttcatctcacaatccggttttgtggggtt 7892605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 12869113 - 12869056
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||| | ||||||||||||||||||||||| |||||||  ||| ||||| |||||    
T  12869113 tgacaatttgtttataagtgggggcaatcatcacctcacaagccggttttgtggggtt 12869056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 339
Target Start/End: Original strand, 16556467 - 16556551
Alignment:
Q  254 ggtaaggaatgatgcataatatatgcaggagtcaggattcgaatttcgaacaccccactttattcacatttaaggtgaatttctct 339  Q
    ||||||| || ||||| ||||| |||||| ||| || ||||||   |||||||||||| |||||||  ||||||||||||||||||    
T  16556467 ggtaagggataatgcacaatatgtgcaggggtcggggttcgaaccccgaacaccccac-ttattcatctttaaggtgaatttctct 16556551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 22231177 - 22231100
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||| ||||||| ||| | ||||||||| ||||||||||||| ||||| ||| |||||||  ||| ||||| |||||    
T  22231177 acatcggataggatatggcctgacaatgtgtttataagtggggacaatcctcacctcacaagccggttttgtggggtt 22231100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 22845551 - 22845474
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    |||||||||| || ||| | ||||||||| |||||||||||||| |||| ||| |||||||  ||| ||||| |||||    
T  22845551 acatcagatatgacatggcctgacaatgtgtttataagtgggggtaatcctcacctcacaagccggttttgtggggtt 22845474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 28246169 - 28246112
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||||| ||||||||||||||||||| ||| |||||||  ||| ||||| |||||    
T  28246169 tgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggtt 28246112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 35175035 - 35175092
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||||| |||||||| ||||| |||||||| ||||||| |||  |||||||||||    
T  35175035 tgacaatgtgtttataagagggggtaatcatcacctcacaagtcgattttgtagggtt 35175092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 53815013 - 53814956
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||| | ||||||||||||||||||| ||| ||||||| |||| ||||| |||||    
T  53815013 tgacaatttgtttataagtgggggcaatcctcacctcacaagtcggttttgtggggtt 53814956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 400669 - 400609
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    |||||||||| ||||||   ||||||||| |||||||||||||| |||| ||| |||||||    
T  400669 acatcagatatgagatggtctgacaatgtgtttataagtgggggaaatcctcacctcacaa 400609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 5846367 - 5846419
Alignment:
Q  25 taggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    |||||| || ||||||||| | ||||||||||||||||||| ||| |||||||    
T  5846367 taggagttggcatgacaatttgtttataagtgggggcaatcctcacctcacaa 5846419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 6218184 - 6218244
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||| ||||||||||| | | ||||| | ||||||||||||||||||| ||| |||||||    
T  6218184 acatcggataggagatggcttcacaatatgtttataagtgggggcaatcttcacctcacaa 6218244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 27634620 - 27634560
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||| ||||||| ||| | ||||||||| ||||| ||||||||||||| ||| |||||||    
T  27634620 acatcggataggacatggcctgacaatgtgtttatgagtgggggcaatcctcacctcacaa 27634560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 31254511 - 31254463
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatc 65  Q
    ||||| |||||| |||| | ||||||||| |||||||||||||||||||    
T  31254511 acatcggataggtgatggcctgacaatgtgtttataagtgggggcaatc 31254463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 35645849 - 35645809
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||||||| ||||||||||||||||||| ||| |||||||    
T  35645849 tgacaatgtgtttataagtgggggcaatcctcacctcacaa 35645809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 44118963 - 44118903
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||| |||| |||||| | ||||||||| |||||||||||||| |||| ||| |||||||    
T  44118963 acatcggataagagatggcctgacaatgtgtttataagtgggggtaatcctcacctcacaa 44118903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 50543671 - 50543611
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||| |||||| |||| | ||||||||| | ||||||||||||||||| ||| |||||||    
T  50543671 acatcggataggtgatggcctgacaatgtgtgtataagtgggggcaatcctcacctcacaa 50543611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 17147764 - 17147686
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtta 95  Q
    ||||| ||||||| ||| | ||||||||||||||||||||||||||||| ||| |||||||  ||| ||||| ||||||    
T  17147764 acatcggataggacatgacctgacaatgtatttataagtgggggcaatcctcacctcacaagccggttttgtggggtta 17147686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 9705020 - 9705077
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||||| ||||||||||||||||||||||| ||||||| |||| ||||| |||||    
T  9705020 tgacaatgtgtttataagtgggggcaatcatcacctcacaagtcggttttgtggggtt 9705077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 3680246 - 3680286
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||||||| ||||||||||||||||||||||| |||||||    
T  3680246 tgacaatgtgtttataagtgggggcaatcatcacctcacaa 3680286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 24554097 - 24554157
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||| |||||||||||   ||||||| ||||||||||||||||||||| ||| |||||||    
T  24554097 acatcggataggagatggtctgacaatatatttataagtgggggcaatcttcacctcacaa 24554157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 12199787 - 12199729
Alignment:
Q  19 atcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||||||| | ||| | |||||||||||||||||||||||| |||| ||| |||||||    
T  12199787 atcagatagaacatgacctgacaatgtatttataagtgggggtaatcctcacctcacaa 12199729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 12319778 - 12319732
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaa 63  Q
    |||| ||||| |||||| ||||||||||| |||||||||||||||||    
T  12319778 acattagataagagatgacatgacaatgtgtttataagtgggggcaa 12319732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 4868661 - 4868604
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||||| ||||||||||||||||||| ||| |||||||  ||| ||||| |||||    
T  4868661 tgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggtt 4868604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 6054403 - 6054460
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    |||||| |||||||||||||||||||||| ||| |||||||  ||  |||||||||||    
T  6054403 tgacaaggtatttataagtgggggcaatcctcacctcacaaaccgattttgtagggtt 6054460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 6543027 - 6542990
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctca 74  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  6543027 tgacaatgtgtttataagtgggggcaatcatcacctca 6542990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 7638691 - 7638646
Alignment:
Q  20 tcagataggagatgccatgacaatgtatttataagtgggggcaatc 65  Q
    |||||||||||||| | ||| ||||| |||||||||||||||||||    
T  7638691 tcagataggagatgacctgataatgtgtttataagtgggggcaatc 7638646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 9705234 - 9705311
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||| ||||||| ||| | | ||||||| ||||||||||||||||||| ||| |||||||  ||| ||||| |||||    
T  9705234 acatcggataggacatggcttaacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggtt 9705311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 28868041 - 28867984
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||| ||||||||||||||||||||| ||| |||||||  ||| ||||| |||||    
T  28868041 tgacaatttatttataagtgggggcaatcctcacctcacaagccggttttgtggggtt 28867984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 33494519 - 33494596
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||| ||||||||||| | ||| ||| | ||||||||||||||||||| ||| |||||||  ||| ||||| |||||    
T  33494519 acatcggataggagatggcttgaaaatatgtttataagtgggggcaatcctcacctcacaagccggttttgtggggtt 33494596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 6237786 - 6237746
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    |||||||||||||||||||| |||||||| ||| |||||||    
T  6237786 tgacaatgtatttataagtgagggcaatcctcacctcacaa 6237746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 12199889 - 12199849
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||||| | ||||||||||||||||||||||| |||||||    
T  12199889 tgacaatatgtttataagtgggggcaatcatcacctcacaa 12199849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 31961158 - 31961206
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatc 65  Q
    |||||||||| | |||| | ||||||||| |||||||||||||||||||    
T  31961158 acatcagatatgtgatggcctgacaatgtgtttataagtgggggcaatc 31961206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 249 - 339
Target Start/End: Complemental strand, 15680985 - 15680896
Alignment:
Q  249 cactcggtaaggaatgatgcataatatatgcaggagtcaggattcgaatttcgaacaccccactttattcacatttaaggtgaatttctct 339  Q
    |||| |||||||||| ||||||||||||||| |  ||||  |||||||  ||| ||||||||| |||||||| ||||||||||||||||||    
T  15680985 cacttggtaaggaataatgcataatatatgcggtggtcaaaattcgaacctcggacaccccac-ttattcacctttaaggtgaatttctct 15680896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 9368810 - 9368857
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaat 64  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||||||||    
T  9368810 acatcggataggagatggcatgacaatgtgtttataagtgggggcaat 9368857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 11896013 - 11895960
Alignment:
Q  23 gataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    |||||| |||| | ||||||||||||||||||| |||||||||||||||||||||    
T  11896013 gataggtgatgacctgacaatgtatttataagt-ggggcaatcatcatctcacaa 11895960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 17352533 - 17352479
Alignment:
Q  23 gataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    |||| |||||| | ||||||||| ||||||||||||||||||||||| |||||||    
T  17352533 gataagagatgacctgacaatgtgtttataagtgggggcaatcatcacctcacaa 17352479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 95370 - 95293
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||| |||||| |||| | ||||||||| ||||||||||||| ||||| |||||||||||  ||| ||||| |||||    
T  95370 acatcggataggtgatgacctgacaatgtgtttataagtggggacaatcctcatctcacaagccggttttgtggggtt 95293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 9368575 - 9368652
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||| ||||||||||| | ||||||||| ||||||||||| ||||||| ||| |||||||  ||| ||||| |||||    
T  9368575 acatcggataggagatggcgtgacaatgtgtttataagtggaggcaatcctcacctcacaagccggttttgtggggtt 9368652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 37782134 - 37782094
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||||||| ||||||||||||||||||||||| |||||||    
T  37782134 tgacaatgtgtttataagtgggggcaatcatcacctcacaa 37782094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 338
Target Start/End: Original strand, 41836056 - 41836139
Alignment:
Q  254 ggtaaggaatgatgcataatatatgcaggagtcaggattcgaatttcgaacaccccactttattcacatttaaggtgaatttctc 338  Q
    |||||||||||| ||||||||| |||||| ||| || |||||| |||| |||  ||| ||||||||  |||||||||||||||||    
T  41836056 ggtaaggaatgaagcataatatgtgcaggggtcggggttcgaacttcggacattcca-tttattcatctttaaggtgaatttctc 41836139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 17017193 - 17017130
Alignment:
Q  19 atcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcgg 82  Q
    ||||||||| ||||| |  |||||||| ||||||||||||| ||||||||| ||||||| ||||    
T  17017193 atcagatagaagatggctcgacaatgtgtttataagtggggtcaatcatcacctcacaagtcgg 17017130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 8081218 - 8081140
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtg-ggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||| ||||||| ||| | ||||||||| |||||||||| ||||||||| |||||||||||  ||| ||||| |||||    
T  8081218 acatcggataggacatggcctgacaatgtgtttataagtggggggcaatcctcatctcacaagccggttttgtggggtt 8081140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 33337336 - 33337282
Alignment:
Q  23 gataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    |||||| |||| | ||||||| | ||||||||||||||||||||||| |||||||    
T  33337336 gataggtgatggcctgacaatatgtttataagtgggggcaatcatcacctcacaa 33337282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 339
Target Start/End: Original strand, 34729483 - 34729571
Alignment:
Q  249 cactcggtaaggaatgatgcataatatatgcaggagtcaggattcgaatttcgaacaccccactttattcacatttaaggtgaatttctct 339  Q
    |||| ||||||| || ||||||| |||||||||| ||| || ||||||   || ||||||||||| |||||| ||||||||||||||||||    
T  34729483 cacttggtaagggataatgcatattatatgcaggggtcggggttcgaacc-cggacaccccactt-attcacctttaaggtgaatttctct 34729571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 2063817 - 2063761
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||||| ||||||||||||||||||| ||| ||||||| |||| ||||| |||||    
T  2063817 tgacaatgtgtttataagtgggggcaatcctca-ctcacaagtcggttttgtggggtt 2063761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 18333569 - 18333492
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||| |||||||||||   ||||||||| |||||||||||||| |||| ||| |||||||  ||| ||||| |||||    
T  18333569 acatcggataggagatggtctgacaatgtgtttataagtgggggtaatcctcacctcacaagccggttttgtggggtt 18333492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 21306890 - 21306927
Alignment:
Q  40 caatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  21306890 caatgtatttataagtgggggcaatcctcacctcacaa 21306927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 21314728 - 21314765
Alignment:
Q  40 caatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  21314728 caatgtatttataagtgggggcaatcctcacctcacaa 21314765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 24528540 - 24528597
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||||| ||||||||||||||||||| ||| |||||||  ||| ||||| |||||    
T  24528540 tgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggtt 24528597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 41666841 - 41666784
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||||| ||||||||||||||||||| ||| |||||||  ||| ||||| |||||    
T  41666841 tgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggtt 41666784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 41667077 - 41667020
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||||| ||||||||||||||||||| ||| |||||||  ||| ||||| |||||    
T  41667077 tgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggtt 41667020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 2062022 - 2061982
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||||||| ||||||||||||||||||| ||| |||||||    
T  2062022 tgacaatgtgtttataagtgggggcaatcttcacctcacaa 2061982  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 13296673 - 13296713
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||||| ||||||||||||||||||||| ||| |||||||    
T  13296673 tgacaatttatttataagtgggggcaatcctcacctcacaa 13296713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 15438987 - 15439027
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||||||| | ||||||||||||||||||||| |||||||    
T  15438987 tgacaatgtgtctataagtgggggcaatcatcacctcacaa 15439027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 65
Target Start/End: Original strand, 15439223 - 15439251
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatc 65  Q
    |||||||||||||||||||||||||||||    
T  15439223 tgacaatgtatttataagtgggggcaatc 15439251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 15480322 - 15480362
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||||||| ||||||||||||||||||| ||| |||||||    
T  15480322 tgacaatgtgtttataagtgggggcaatcctcacctcacaa 15480362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 24346605 - 24346545
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||| ||||||| ||| | ||||||||| |||||||||||||| |||| ||| |||||||    
T  24346605 acatcggataggacatggcctgacaatgtgtttataagtgggggtaatcctcacctcacaa 24346545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 24531599 - 24531639
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||||||| ||||||||||||||||||| ||| |||||||    
T  24531599 tgacaatgtgtttataagtgggggcaatcctcacctcacaa 24531639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 29909592 - 29909520
Alignment:
Q  16 gacatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgt 88  Q
    |||||| | |||||| || | ||||||| ||||||||||||| ||||||| ||| ||||||| |||| |||||    
T  29909592 gacatcggttaggagttggcctgacaatttatttataagtggaggcaatcctcacctcacaaatcggttttgt 29909520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 31181115 - 31181055
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||| |||||| |||| | ||||||| | |||||| |||||||||||||||| |||||||    
T  31181115 acatcggataggtgatgacttgacaatatgtttatatgtgggggcaatcatcacctcacaa 31181055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 32908802 - 32908762
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||||||| ||||||||||| ||||||||||| |||||||    
T  32908802 tgacaatgtgtttataagtggaggcaatcatcacctcacaa 32908762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 38731707 - 38731647
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||| ||||||||||| | ||||||| |||||||||||| | ||||||| || |||||||    
T  38731707 acatcggataggagatgacctgacaatttatttataagtgagagcaatcaccacctcacaa 38731647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 16163147 - 16163225
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtta 95  Q
    ||||| |||||| |||| | ||||||||| ||||||||||||||||||| ||| |||||||| ||| ||||| ||||||    
T  16163147 acatcggataggtgatgacttgacaatgtgtttataagtgggggcaatcttcacctcacaatccggttttgtggggtta 16163225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 17452783 - 17452706
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    |||||||||| || ||| | ||||||||||||||||||||||||||||| ||| |||||||  ||| ||||| |||||    
T  17452783 acatcagataagacatggcctgacaatgtatttataagtgggggcaatcctcacctcacaagccggttttgtggggtt 17452706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 38668124 - 38668165
Alignment:
Q  36 atgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  38668124 atgacaatgtgtttataagtgggggcaatcatcatctcacaa 38668165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 39348456 - 39348379
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||||||||||||| | |||||| || ||||||||||||||||||| ||| |||||||  ||| ||||| |||||    
T  39348456 acatcagataggagatggcttgacaacgtgtttataagtgggggcaatcctcacctcacaaaccggttttgtggggtt 39348379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 40079132 - 40079209
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||| ||||||||||| | ||||||||| ||||||||||||||||||| ||| |||||||  ||| ||||| |||||    
T  40079132 acatcggataggagatgacctgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggtt 40079209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 17452912 - 17452855
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||||||||||||||||||||||||| ||| |||||||  ||| ||||| |||||    
T  17452912 tgacaatgtatttataagtgggggcaatcttcacctcacaagccggttttgtggggtt 17452855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 25145824 - 25145747
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||| |||||| |||| | ||||||||||||||| ||||||||||||| ||| |||||||  ||| ||||| |||||    
T  25145824 acatcggataggtgatgacctgacaatgtatttattagtgggggcaatcctcacctcacaagccggatttgtggggtt 25145747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 4112644 - 4112584
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||| || |||| ||| ||||||||||| ||||||||| ||||||||||||| |||||||    
T  4112644 acatcggacaggacatggcatgacaatgtgtttataagtaggggcaatcatcacctcacaa 4112584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 15986437 - 15986377
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||| ||||||||||  | ||||||||| ||||||||||||||||||| ||| |||||||    
T  15986437 acatcggataggagatagcctgacaatgtgtttataagtgggggcaatcctcacctcacaa 15986377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 26173308 - 26173268
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||||||| ||||||||||||||||||||||| |||||||    
T  26173308 tgacaatgtgtttataagtgggggcaatcatcacctcacaa 26173268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 35772244 - 35772292
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatc 65  Q
    ||||| ||||||||||| | ||||||||| |||||||||||||||||||    
T  35772244 acatcggataggagatggcctgacaatgtgtttataagtgggggcaatc 35772292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 52650875 - 52650815
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||| ||||||||||| |  |||||||| ||||||||||||||||||| ||| |||||||    
T  52650875 acatcggataggagatggccggacaatgtgtttataagtgggggcaatcctcacctcacaa 52650815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 19424064 - 19424146
Alignment:
Q  256 taaggaatgatgcataatatatgcaggagtcaggattcgaatttcgaacaccccactttattcacatttaaggtgaatttctct 339  Q
    ||||| || ||||||| |||||||||| ||| || ||||||   || ||||||||||| |||||| ||||||||||||||||||    
T  19424064 taagggataatgcatattatatgcaggggtcggggttcgaaccccggacaccccactt-attcacctttaaggtgaatttctct 19424146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 38668360 - 38668411
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgt 88  Q
    ||||||||| ||||||||||||||||||||||| || |||| |||| |||||    
T  38668360 tgacaatgtgtttataagtgggggcaatcatcaccttacaagtcggttttgt 38668411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 339
Target Start/End: Complemental strand, 25031565 - 25031492
Alignment:
Q  265 atgcataatatatgcaggagtcaggattcgaatttcgaacaccccactttattcacatttaaggtgaatttctct 339  Q
    ||||||||||| |||||| | | || |||||||| || ||||||||| |||||||  ||||||||||||||||||    
T  25031565 atgcataatatgtgcaggggccggggttcgaattccggacaccccac-ttattcatctttaaggtgaatttctct 25031492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 4113090 - 4113033
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||||| ||||||||||||||||||| ||| |||||||  ||| ||||| |||||    
T  4113090 tgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggtt 4113033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 26865442 - 26865385
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    |||||||||||||||||||||||||||||  || |||||||  ||| ||||| |||||    
T  26865442 tgacaatgtatttataagtgggggcaatccccacctcacaagccggttttgtggggtt 26865385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 35892291 - 35892348
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||||||||||||||||||||||||  ||| |||||||  ||| ||||| |||||    
T  35892291 tgacaatgtatttataagtgggggcaatactcacctcacaacccggttttgtggggtt 35892348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 2859496 - 2859448
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatc 65  Q
    ||||| |||||| |||| | ||||||||| |||||||||||||||||||    
T  2859496 acatcggataggtgatggcctgacaatgtgtttataagtgggggcaatc 2859448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 8870773 - 8870733
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||||||| ||||||||||||||||||| ||| |||||||    
T  8870773 tgacaatgtgtttataagtgggggcaatcctcacctcacaa 8870733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 25713393 - 25713433
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||||||| ||||||||||||||||||| ||| |||||||    
T  25713393 tgacaatgtgtttataagtgggggcaatcgtcacctcacaa 25713433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 51460311 - 51460259
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatca 69  Q
    |||||||||||| |||| | | ||||||| ||||||||| |||||||||||||    
T  51460311 acatcagataggtgatgacctaacaatgtgtttataagtaggggcaatcatca 51460259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 5635 - 5712
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||| |||| |||||| ||||  ||| ||||| |||||    
T  5635 acatcagatagaagatggcatgacaatgtgtttataagtgggggtaatcctcatcttacaagccggttttgtggggtt 5712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 17854776 - 17854725
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgt 88  Q
    ||||||| | ||||||||||||||||||||||||||||||| |||| |||||    
T  17854776 tgacaatctgtttataagtgggggcaatcatcatctcacaagtcggttttgt 17854725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 37840323 - 37840394
Alignment:
Q  23 gataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||||||| | ||||||||| ||||||||||| ||||||||||| |||||||  ||| ||||| |||||    
T  37840323 gataggagatgacctgacaatgtgtttataagtggaggcaatcatcacctcacaagccggttttgtggggtt 37840394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 38629821 - 38629892
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgt 88  Q
    ||||| |||| || ||| ||||||||||||||||||||| ||| ||||| ||||||||||| |||| |||||    
T  38629821 acatcggataagaaatgacatgacaatgtatttataagttgggacaatcctcatctcacaagtcggttttgt 38629892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 17719380 - 17719457
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||| |||||| |||| | ||||||||| ||||||||||||||||||| ||| |||||||  ||| ||||| |||||    
T  17719380 acatcggataggtgatggcctgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtcgggtt 17719457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 8424888 - 8424928
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||||| ||||||||||||||||||||||||| |||||||    
T  8424888 tgacaatttatttataagtgggggcaatcatcacctcacaa 8424928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 35418518 - 35418458
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||| ||||||||||| ||| ||||| |||||||| |||||||||||| ||| |||||||    
T  35418518 acatcggataggagatgacataacaatatatttataggtgggggcaatcctcacctcacaa 35418458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 94124 - 94053
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgt 88  Q
    ||||| |||||| |||| | ||||| ||| ||||||||||||||||||| ||| ||||||| |||| |||||    
T  94124 acatcggataggtgatggcctgacagtgtgtttataagtgggggcaatcctcacctcacaagtcggttttgt 94053  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 14927082 - 14927153
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgt 88  Q
    ||||| |||| |||||| | ||||||||| ||||||||||||||||||| ||| |||| || || |||||||    
T  14927082 acatcggataagagatgacctgacaatgtgtttataagtgggggcaatcctcacctcataagtcagctttgt 14927153  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 25082639 - 25082581
Alignment:
Q  19 atcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    |||||||| ||||||   ||||||||| ||||||||| ||||||||||||| |||||||    
T  25082639 atcagataagagatggtctgacaatgtgtttataagtaggggcaatcatcacctcacaa 25082581  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 1926524 - 1926471
Alignment:
Q  38 gacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagg 91  Q
    |||||| |||||||||||||||| |||| ||| ||||||| |||| ||||||||    
T  1926524 gacaatttatttataagtgggggtaatcctcacctcacaaatcggttttgtagg 1926471  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 2029749 - 2029826
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||| ||||||| ||| | ||||||||| ||||||||||| ||||||| ||| |||||||  ||| ||||| |||||    
T  2029749 acatcggataggacatgacctgacaatgtgtttataagtggaggcaatcctcacctcacaagccggttttgtggggtt 2029826  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 16419502 - 16419559
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||||| ||||||||||||||||||| ||| |||||||  ||| ||||| |||||    
T  16419502 tgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggtt 16419559  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 18607113 - 18607056
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctca 74  Q
    |||||||||||| |||| | ||||||||| ||||| ||||||| ||||||||| ||||    
T  18607113 acatcagataggtgatggcctgacaatgtgtttattagtggggacaatcatcacctca 18607056  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 32356377 - 32356414
Alignment:
Q  28 gagatgccatgacaatgtatttataagtgggggcaatc 65  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  32356377 gagatgacatgacaatgtgtttataagtgggggcaatc 32356414  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 40379313 - 40379236
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||| |||||| |||| | ||||| ||| ||||||||||||||||||| ||| |||||||  ||| ||||| |||||    
T  40379313 acatcggataggtgatggcctgacagtgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggtt 40379236  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 40379548 - 40379471
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||| |||||| |||| | ||||| ||| ||||||||||||||||||| ||| |||||||  ||| ||||| |||||    
T  40379548 acatcggataggtgatggcctgacagtgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggtt 40379471  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 3738913 - 3738961
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatc 65  Q
    ||||| ||||| ||||| ||||| ||||| |||||||||||||||||||    
T  3738913 acatcggatagaagatgacatgataatgtgtttataagtgggggcaatc 3738961  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 5711759 - 5711727
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatca 69  Q
    ||||||||| |||||||||||||||||||||||    
T  5711759 tgacaatgtgtttataagtgggggcaatcatca 5711727  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 5851766 - 5851726
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||||||||||||||||||||| ||||| ||| |||||||    
T  5851766 tgacaatgtatttataagtggggacaatcctcacctcacaa 5851726  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 17525422 - 17525382
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||||||| ||||||||||||||||||| ||| |||||||    
T  17525422 tgacaatgtgtttataagtgggggcaatcctcacctcacaa 17525382  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 33606158 - 33606098
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||| ||||||||||| | ||| ||||| ||||||||| ||||||||| ||| |||||||    
T  33606158 acatcggataggagatggcctgaaaatgtgtttataagtaggggcaatcctcacctcacaa 33606098  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 37812372 - 37812312
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||| ||||||| ||| | ||||||||| ||||||||||||| ||||| ||| |||||||    
T  37812372 acatcggataggacatggcctgacaatgtgtttataagtggggacaatcctcacctcacaa 37812312  T

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Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 37812582 - 37812542
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||||||| ||||||||||||||||||| ||| |||||||    
T  37812582 tgacaatgtgtttataagtgggggcaatcctcacctcacaa 37812542  T

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Target: scaffold0692 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 5838 - 5798
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||||||| ||||||||||||||||||| |||||||||||    
T  5838 tgacaatgtgtttataagtgggggcaatcctcatctcacaa 5798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 4533 - 4456
Alignment:
Q  17 acatcagataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||| |||||| || | ||||||| | ||||||||||||||||||| ||| |||||||  ||| ||||| |||||    
T  4533 acatcagttaggagttggcctgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtggggtt 4456  T

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Target: scaffold0129 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 14303 - 14360
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||||| ||||||||||||| ||||||||| |||||||  ||| ||||| |||||    
T  14303 tgacaatgtgtttataagtggggacaatcatcacctcacaagccggttttgtggggtt 14360  T

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Target: scaffold0083 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 51236 - 51293
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaattcggctttgtagggtt 94  Q
    ||||||||| ||||||||||||||||||| ||| ||||||| || | ||||| |||||    
T  51236 tgacaatgtgtttataagtgggggcaatcctcacctcacaagtcagttttgtggggtt 51293  T

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Target: scaffold0047 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 12868 - 12921
Alignment:
Q  24 ataggagatgccatgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||| |||| | |||||||| |||||||||||||||||||| |||||| ||||    
T  12868 ataggtgatggcttgacaatgaatttataagtgggggcaatcctcatcttacaa 12921  T

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Target: scaffold0047; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 12647 - 12687
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    |||||||||||||||| |||||||||||| ||| |||||||    
T  12647 tgacaatgtatttatatgtgggggcaatcctcacctcacaa 12687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0766 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 6274 - 6314
Alignment:
Q  37 tgacaatgtatttataagtgggggcaatcatcatctcacaa 77  Q
    ||||||||| ||||||||||||||||||| ||| |||||||    
T  6274 tgacaatgtgtttataagtgggggcaatcctcacctcacaa 6314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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