View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8903_low_31 (Length: 455)
Name: NF8903_low_31
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 13 - 441
Target Start/End: Original strand, 443806 - 444235
Alignment:
| Q |
13 |
atttagacagtgatagcttcattcttggcatgcagtcggagaaactaagctcaaccaatttcatgtcatgcg-cggcaaactaccggtggcggaggcttt |
111 |
Q |
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| T |
443806 |
atttagacagtgatagcttcattcttggcatgcagtcggagaaactaagctcaaccaatttcatgtcatgcgacggcaaactaatggtggcggaggcttt |
443905 |
T |
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| Q |
112 |
gggtgggaggtcggagaagctaaaccttcaaacactccaatccaaagttgaacgcgacccaaaaggctacatattggaggttcttcttattcactctcaa |
211 |
Q |
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| T |
443906 |
gggtgggaggtcggagaagctaaaccttcaaacactccaatccaaagttgaacgcgacccaataggctacatattggaggttctccttattcactctcaa |
444005 |
T |
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| Q |
212 |
ttcaattcctccctccaactatttcaacaagcggccatgaacttcatttccatcaacggaatcatcgattctgacctaacaactgttgcttctgatccaa |
311 |
Q |
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| T |
444006 |
ttcaattcctccctccaactatttcaacaagcggccatgaacttcatttccgtcaacggaatcatcgattctgacctaacaactgttgcttctgatccaa |
444105 |
T |
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| Q |
312 |
ctgtcgctgaagacctggctgagagggccatgttcctcacacttgttgcccctttctaccctacacttttcttcctcgccgatttccctataagacttgt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
444106 |
ctgtcgctgaagacctggctgagagggccatgttcctcacacttgttgccccttcctaccctacacttttcttcctcgccgatttccctataagacttgt |
444205 |
T |
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| Q |
412 |
ttatttgctccatagtttcgcacagtttat |
441 |
Q |
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| T |
444206 |
ttatttgctccatagtttcgcacagtttat |
444235 |
T |
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