View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8903_low_33 (Length: 436)
Name: NF8903_low_33
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 29 - 294
Target Start/End: Complemental strand, 43900117 - 43899849
Alignment:
| Q |
29 |
cttccaaagaaactgtcaaaaacgccccaacgccactcggcccctgtaagaatcaaaatattgttg---acaaagtaataaaatccgaaaatctcaaagg |
125 |
Q |
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| T |
43900117 |
cttccaaagaaactgtcaaaaatgccccaacgccactcggcccttgtaagaatcaaaatattgttgttgacaaagtaataaaatccgaaaatctcaaagg |
43900018 |
T |
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| Q |
126 |
aggattccgaaaatcgctactgcatacaaggattcttggagcgctggatccgagagagttatggcagatccagattcggaatgatggattttgatgaaga |
225 |
Q |
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| T |
43900017 |
aggattccgaaaatcgctactgcatacaaggattcttggagcgctggatccgagagagctatggcagatccagattcgaaatgatggattttgataaaga |
43899918 |
T |
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| Q |
226 |
ttcagttcttgatgaaggttcacgcataaaaattcttcaatccagattttgaatcaaacctgtatgggc |
294 |
Q |
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| T |
43899917 |
ttcagttcttgatgaaggtttacgcataaaaattcttcaatccagattttgaatcaaacctgtatgggc |
43899849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 331 - 424
Target Start/End: Complemental strand, 43899812 - 43899718
Alignment:
| Q |
331 |
taaggatgatcttgtttctacttcaaaatgatgatgtagaaggnnnnnnnn-tcaattggaatttttgtgctttgttgttatgttatgtgatgtc |
424 |
Q |
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| T |
43899812 |
taaggatgatcttgtttctacttcaaaatgatgatgcagaagggaaaaaaaatcaattggaatttttgtgctttgttgttatgttatgtgatgtc |
43899718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 17 - 294
Target Start/End: Complemental strand, 18905559 - 18905262
Alignment:
| Q |
17 |
agcacagaggtccttccaaagaaactgtcaaaaacgccccaacgccactcggcccctgtaagaatcaaaatattgttg---acaaagtaataaaatccga |
113 |
Q |
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| T |
18905559 |
agcatagaggtccttccaaagaaactgtcaaaaacgccccaacgccactcggcccctgtaagaatcaaaatattgttgttgacaaagtaataaaatccga |
18905460 |
T |
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| Q |
114 |
aaatctcaaaggaggattccgaaaatcgctactgcatacaaggattcttggagcgctggatccgagagagttatggcagatccagattcgg--------- |
204 |
Q |
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| T |
18905459 |
aaatctcaaaggaggattccgaaaatcgctactgcatacaaggattcttggagcgctgggtccgagagagctatggcatatccagattcggatctaattc |
18905360 |
T |
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| Q |
205 |
--------aatgatggattttgatgaagattcagttcttgatgaaggttcacgcataaaaattcttcaatccagattttgaatcaaacctgtatgggc |
294 |
Q |
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| T |
18905359 |
agattcgaaatgatggagtttgatgaagattcagttcttgatgaaggttcacgcataaaatttcttcaatccatattttgaatcaaatctgtatgggc |
18905262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 193 - 292
Target Start/End: Original strand, 11938374 - 11938473
Alignment:
| Q |
193 |
atccagattcggaatgatggattttgatgaagattcagttcttgatgaaggttcacgcataaaaattcttcaatccagattttgaatcaaacctgtatgg |
292 |
Q |
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| T |
11938374 |
atccagatacggaatgatggattttgatgaagattcagttcttgatgaaggttcacgcgtacaaattcttcaatccatattttgaatcaaacttgtatgg |
11938473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 424
Target Start/End: Complemental strand, 18905225 - 18905128
Alignment:
| Q |
331 |
taaggatgatcttgtttctacttcaa---aatgatgatgtagaaggnnnnnnnn-tcaattggaatttttgtgctttgttgttatgttatgtgatgtc |
424 |
Q |
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| T |
18905225 |
taaggatgatcttgtttctacttcaacaaaatgatgatgcagaagggaaaaaaaatcaattgaaatttttgtgctttgttgttatgttatgcgatgtc |
18905128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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