View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8903_low_35 (Length: 403)

Name: NF8903_low_35
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8903_low_35
NF8903_low_35
[»] scaffold0019 (1 HSPs)
scaffold0019 (9-394)||(182869-183255)
[»] chr1 (10 HSPs)
chr1 (93-394)||(23632038-23632330)
chr1 (190-321)||(12786236-12786367)
chr1 (139-227)||(91207-91294)
chr1 (190-330)||(18513783-18513922)
chr1 (71-149)||(91795-91876)
chr1 (69-110)||(12484102-12484143)
chr1 (55-110)||(12786446-12786500)
chr1 (71-114)||(18513625-18513668)
chr1 (81-114)||(9131497-9131530)
chr1 (199-275)||(52274436-52274511)
[»] scaffold0088 (1 HSPs)
scaffold0088 (93-330)||(35356-35592)
[»] chr2 (6 HSPs)
chr2 (199-291)||(27386910-27387002)
chr2 (190-321)||(16093525-16093654)
chr2 (208-270)||(32623583-32623645)
chr2 (55-112)||(32623432-32623488)
chr2 (70-109)||(20263513-20263552)
chr2 (190-270)||(20263668-20263749)
[»] chr6 (8 HSPs)
chr6 (100-258)||(15285819-15285976)
chr6 (190-342)||(9548733-9548883)
chr6 (190-292)||(19892897-19892999)
chr6 (193-321)||(19768997-19769124)
chr6 (70-114)||(19565047-19565091)
chr6 (55-110)||(19893078-19893132)
chr6 (70-108)||(19893120-19893158)
chr6 (98-158)||(13285897-13285957)
[»] chr4 (10 HSPs)
chr4 (190-307)||(23974136-23974252)
chr4 (190-270)||(19611885-19611965)
chr4 (55-110)||(18873786-18873841)
chr4 (190-289)||(25126199-25126298)
chr4 (56-110)||(15706878-15706931)
chr4 (71-114)||(14645996-14646039)
chr4 (55-110)||(19611752-19611806)
chr4 (55-110)||(25126067-25126120)
chr4 (208-290)||(18552294-18552376)
chr4 (190-290)||(11153843-11153940)
[»] chr8 (5 HSPs)
chr8 (193-374)||(17290570-17290751)
chr8 (81-158)||(6465857-6465934)
chr8 (214-267)||(42147468-42147521)
chr8 (55-110)||(42147627-42147681)
chr8 (202-292)||(40391402-40391492)
[»] chr3 (11 HSPs)
chr3 (190-292)||(3593101-3593202)
chr3 (185-290)||(6460022-6460127)
chr3 (190-292)||(15777305-15777406)
chr3 (199-289)||(18705496-18705586)
chr3 (121-292)||(3262146-3262316)
chr3 (190-284)||(9733588-9733682)
chr3 (190-330)||(30993200-30993339)
chr3 (55-106)||(9733455-9733505)
chr3 (55-110)||(18705354-18705408)
chr3 (71-107)||(3290882-3290918)
chr3 (240-343)||(18534434-18534535)
[»] scaffold0281 (2 HSPs)
scaffold0281 (224-327)||(1839-1940)
scaffold0281 (56-110)||(2012-2065)
[»] chr7 (10 HSPs)
chr7 (190-321)||(18147568-18147698)
chr7 (100-217)||(22949172-22949289)
chr7 (55-110)||(3312845-3312900)
chr7 (194-297)||(11508678-11508781)
chr7 (202-297)||(32945370-32945463)
chr7 (69-110)||(34707314-34707355)
chr7 (70-109)||(11508515-11508554)
chr7 (55-110)||(11508541-11508595)
chr7 (199-292)||(33721260-33721354)
chr7 (70-112)||(33721489-33721531)
[»] chr5 (3 HSPs)
chr5 (193-292)||(39435924-39436023)
chr5 (56-110)||(21143764-21143817)
chr5 (243-321)||(39176441-39176519)
[»] scaffold0323 (1 HSPs)
scaffold0323 (184-343)||(16223-16383)
[»] scaffold0978 (1 HSPs)
scaffold0978 (55-110)||(3013-3067)
[»] scaffold0005 (1 HSPs)
scaffold0005 (71-114)||(171251-171294)


Alignment Details
Target: scaffold0019 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 9 - 394
Target Start/End: Complemental strand, 183255 - 182869
Alignment:
Q  9 agcagagagatgtgtgaatagcaaaacagtgtagttnnnnnnnnnn-gattagtaacaaacctagaggtacatatagtaatctgaaaagattagtaacaa 107  Q
    ||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  183255 agcagagagatgtgtgaatagcaaaacagtgtagttaaaaaaagaaagattagtaacaaacctagaggtacatatagtaatctgaaaagattagtaacaa 183156  T
Q  108 acttagatgaggattataaatagatgagaacattagaaaaatagggttacaccgatcagagaaaagattagagaataaaaggaaactaggattgtggaga 207  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||    
T  183155 acttagatgatgattataaatagatgagaacattagaaaaatagggttacaccgatcagagaaaatattagagaacaaaaggaaactagggttgtggaga 183056  T
Q  208 gaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggagggaagtttctatt 307  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  183055 gaagaggcaaggaggcatagggagaggaacgtagatagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggggggaaatttctatt 182956  T
Q  308 tagcatatgggttgcatgaacatgtggtagtgaaggatctttgcttgctttcatgatcttttgatgaatttatgttgtgatgtccat 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  182955 tagcatatgggttgcatgaacatgtggtagtgaaggatctttgcttgctttcatgatcttttgatgaatttatcttgtgatgtccat 182869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 163; Significance: 6e-87; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 93 - 394
Target Start/End: Original strand, 23632038 - 23632330
Alignment:
Q  93 aaagattagtaacaaacttagatgaggattataaatagatgagaacattagaaaaatagggttacaccgatcagagaaaagattagagaataaaaggaaa 192  Q
    |||||||||||||||||||||      |||||||||||| ||||||||||||||| |||||||||| | |  |||||||||||||||||| ||||| |||    
T  23632038 aaagattagtaacaaacttagc-----attataaatagacgagaacattagaaaactagggttacaacaa--agagaaaagattagagaacaaaagaaaa 23632130  T
Q  193 ctaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaagg 292  Q
    ||||| |||| ||||||||||||||| |||||||   |||| ||||||||||||||||||||||||| || |||||||||||   |||||||||||||||    
T  23632131 ctagggttgttgagagaagaggcaagaaggcatactaagagaaacgtagagagagatttcaccgtaggaactcatcaaattcgaaaaactagaggtaagg 23632230  T
Q  293 agggaagtttctatttagcatatgggttgcatgaacatgtggtagtgaaggatctttgcttgctttcatgatcttttgatgaatttatgttgtgatgtcc 392  Q
     ||| |||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23632231 -ggggagtttctatttagcatatgggttgcatgaacacgtgggtgtgaaggatctttgcttgctttcatgatcttttgatgaatttat-ttgtgatgtcc 23632328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 190 - 321
Target Start/End: Complemental strand, 12786367 - 12786236
Alignment:
Q  190 aaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggta 289  Q
    |||||||| |||||||||||| |||||||| |||||||  ||| |||| |  |||||||||||||||||| || |||||||||||| |||||||||||||    
T  12786367 aaactagggttgtggagagaaaaggcaaggtggcatagaaagaagaacctgaagagagatttcaccgtaggaattcatcaaattctccaaactagaggta 12786268  T
Q  290 aggagggaagtttctatttagcatatgggttg 321  Q
    | | ||| ||| |||||| | |||| ||||||    
T  12786267 atggggggagtctctattcatcataagggttg 12786236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 91294 - 91207
Alignment:
Q  139 attagaaaaatagggttacaccgatcagagaaaagattagagaataaaaggaaactaggattgtggagagaagaggcaaggaggcatag 227  Q
    |||||||||||||||||||| | | || |||||||||||||||  ||| | |||||||| |||||||||||||| ||||||||||||||    
T  91294 attagaaaaatagggttacaacaagcaaagaaaagattagagatcaaaggaaaactagggttgtggagagaaga-gcaaggaggcatag 91207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 190 - 330
Target Start/End: Original strand, 18513783 - 18513922
Alignment:
Q  190 aaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggta 289  Q
    |||||||| || |||||||||||||| | |||| |||| |||| |||| ||||||||||||| | | ||| |||||||||| |||   |||||| |||||    
T  18513783 aaactagggttatggagagaagaggccaagaggaatagtgagaagaacctagagagagattttaacataggaaatcatcaatttcgcaaaactaaaggta 18513882  T
Q  290 aggagggaagtttctatttagcatatgggttgcatgaacat 330  Q
    ||| ||||||| |||||| | |||| |||||| ||||||||    
T  18513883 agg-gggaagtctctattcaccataagggttgtatgaacat 18513922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 71 - 149
Target Start/End: Complemental strand, 91876 - 91795
Alignment:
Q  71 agaggtacatatagtaatctgaaaagattagtaacaaacttagatg---aggattataaatagatgagaacattagaaaaat 149  Q
    |||||| || ||||||||||||||||||||||||||||||||| ||   | ||||||||||||||||||| |||| ||||||    
T  91876 agaggtgcagatagtaatctgaaaagattagtaacaaacttagctgaatatgattataaatagatgagaatattataaaaat 91795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 12484102 - 12484143
Alignment:
Q  69 ctagaggtacatatagtaatctgaaaagattagtaacaaact 110  Q
    |||||||| || ||||||||||||||||||||||||||||||    
T  12484102 ctagaggtgcagatagtaatctgaaaagattagtaacaaact 12484143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 12786500 - 12786446
Alignment:
Q  55 gattagtaacaaacctagaggtacatatagtaatctgaaaagattagtaacaaact 110  Q
    ||||||||||||||||||| | |||||||||||| | |||||||| ||||||||||    
T  12786500 gattagtaacaaacctagaag-acatatagtaatataaaaagattggtaacaaact 12786446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 18513625 - 18513668
Alignment:
Q  71 agaggtacatatagtaatctgaaaagattagtaacaaacttaga 114  Q
    |||||| || |||||||| |||||||||||||||||||||||||    
T  18513625 agaggtgcagatagtaatttgaaaagattagtaacaaacttaga 18513668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 9131497 - 9131530
Alignment:
Q  81 atagtaatctgaaaagattagtaacaaacttaga 114  Q
    |||||||| |||||||||||||||||||||||||    
T  9131497 atagtaatttgaaaagattagtaacaaacttaga 9131530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 275
Target Start/End: Complemental strand, 52274511 - 52274436
Alignment:
Q  199 ttgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattct 275  Q
    |||||||||||| | |||||  |||||||  ||| |||| | |||||||||||||||||| ||| ||||||||||||    
T  52274511 ttgtggagagaaaaagcaagatggcatagaaagaagaactt-gagagagatttcaccgtaaaaattcatcaaattct 52274436  T

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Target: scaffold0088 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 93 - 330
Target Start/End: Original strand, 35356 - 35592
Alignment:
Q  93 aaagattagtaacaaacttagatgaggattataaatagatgagaacattagaaaaatagggttacaccgatcagagaaaagattagagaataaaaggaaa 192  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||| | | |||| |||||||||||||| ||||| |||    
T  35356 aaagattagtaacaaacttaggtgatgattataaatagatgagaacattagaaaaataggattacaacaaacagaaaaaagattagagaacaaaagaaaa 35455  T
Q  193 ctaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaagg 292  Q
    ||||| |||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||| || |||||||||||  ||||||||||||||||    
T  35456 ctagggttgtggagagaaaaggcaagaaggcatagcaagaggaacgtagagagagatttcaccgtaggaactcatcaaattcgacaaactagaggtaagg 35555  T
Q  293 agggaagtttctatttagcatatgggttgcatgaacat 330  Q
     ||| ||| |||||| ||| || |||||| || |||||    
T  35556 -ggggagtctctattcagcgtaagggttgtatcaacat 35592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 199 - 291
Target Start/End: Original strand, 27386910 - 27387002
Alignment:
Q  199 ttgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaag 291  Q
    ||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||| || |||   ||||||||||||||    
T  27386910 ttgtggagagaagaggcaaggaggcatggcgagaagaacctagagagagatttcaccgtagaaaatcattaatttcgcaaaactagaggtaag 27387002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 190 - 321
Target Start/End: Complemental strand, 16093654 - 16093525
Alignment:
Q  190 aaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggta 289  Q
    |||||||| || ||||||||| |||||| || | |||||||||||||| |||||||||||||||| ||||||| ||||| | || |||||||||||||||    
T  16093654 aaactagggttatggagagaaaaggcaaagatgaatagcgagaggaacctagagagagatttcactgtagaaattcatc-acttttgcaaactagaggta 16093556  T
Q  290 aggagggaagtttctatttagcatatgggttg 321  Q
    | ||||| ||| |||||| | |||| ||||||    
T  16093555 a-gaggggagtctctattcaccataagggttg 16093525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 208 - 270
Target Start/End: Original strand, 32623583 - 32623645
Alignment:
Q  208 gaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaa 270  Q
    |||||||||| |||| ||| ||||| |||  ||||||||||||||||||||||||||||||||    
T  32623583 gaagaggcaaagaggaataacgagaagaatctagagagagatttcaccgtagaaaatcatcaa 32623645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 32623432 - 32623488
Alignment:
Q  55 gattagtaacaaacctagaggtacatatagtaatctgaaaagattagtaacaaactta 112  Q
    ||||||||||||||||||| | |||||||||||||| ||||||||||| |||||||||    
T  32623432 gattagtaacaaacctagatg-acatatagtaatctaaaaagattagtgacaaactta 32623488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 20263513 - 20263552
Alignment:
Q  70 tagaggtacatatagtaatctgaaaagattagtaacaaac 109  Q
    |||||||||| |||||||| ||||||||||||||||||||    
T  20263513 tagaggtacaaatagtaatttgaaaagattagtaacaaac 20263552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 270
Target Start/End: Original strand, 20263668 - 20263749
Alignment:
Q  190 aaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttc-accgtagaaaatcatcaa 270  Q
    |||||||| ||||||||| ||||| |||||||||| | ||||| |||  || ||||||||||| ||||||| || |||||||    
T  20263668 aaactagggttgtggagaaaagagtcaaggaggcacaccgagaagaatctaaagagagatttctaccgtaggaattcatcaa 20263749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 100 - 258
Target Start/End: Original strand, 15285819 - 15285976
Alignment:
Q  100 agtaacaaacttagatgaggattataaatagatgagaacattagaaaaatagggttacaccgatcagagaaaagattagagaataaaaggaaa-ctagga 198  Q
    |||||||||||||| | | ||||||||||||||||||||||||| |||||||||||||| | | || |||||| ||||||| || |||| ||| |||| |    
T  15285819 agtaacaaacttagcttatgattataaatagatgagaacattaggaaaatagggttacaacaaaca-agaaaatattagag-atcaaagaaaatctagta 15285916  T
Q  199 ttgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgta 258  Q
    |||||||||||||| |||| || |||||| |||| |||  | ||||||||||||||||||    
T  15285917 ttgtggagagaagacgcaaagaagcatagtgagaagaatctggagagagatttcaccgta 15285976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 190 - 342
Target Start/End: Complemental strand, 9548883 - 9548733
Alignment:
Q  190 aaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgc--aaactagagg 287  Q
    |||||||| ||||||||||||||| ||||||||||||||||||  ||||||||  ||||||||||||||| |||||||||| ||| ||  |||||||||     
T  9548883 aaactagggttgtggagagaagagacaaggaggcatagcgagaaaaacgtaga--gagatttcaccgtaggaaatcatcaatttc-gcaaaaactagaga 9548787  T
Q  288 taaggagggaagtttctatttagcatatgggttgcatgaacatgtggtagtgaag 342  Q
    ||||| ||| ||| ||| || | |||| |||||| |||| ||| |||||||||||    
T  9548786 taagg-ggggagtctctgttcatcataagggttgtatgatcatatggtagtgaag 9548733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 190 - 292
Target Start/End: Complemental strand, 19892999 - 19892897
Alignment:
Q  190 aaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggta 289  Q
    |||||||| ||||||||| ||||| |||| ||||| | ||||| |||  |||||||| |||||| |||||||| |||||||||||| | |||||||||||    
T  19892999 aaactagggttgtggagaaaagagtcaagcaggcacaccgagaagaatctagagagaaatttcatcgtagaaattcatcaaattctccgaactagaggta 19892900  T
Q  290 agg 292  Q
    |||    
T  19892899 agg 19892897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 321
Target Start/End: Original strand, 19768997 - 19769124
Alignment:
Q  193 ctaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaagg 292  Q
    ||||| ||||||||| ||||| || | ||||| | ||||| |||  ||||||||||||||||||||| || |||||||||||| | |||||||||||| |    
T  19768997 ctagggttgtggagaaaagagtcatg-aggcacaccgagaagaatctagagagagatttcaccgtaggaattcatcaaattcttcgaactagaggtaatg 19769095  T
Q  293 agggaagtttctatttagcatatgggttg 321  Q
     ||| ||| |||||| | |||| ||||||    
T  19769096 gggggagtctctattcatcataagggttg 19769124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 19565047 - 19565091
Alignment:
Q  70 tagaggtacatatagtaatctgaaaagattagtaacaaacttaga 114  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||    
T  19565047 tagaggtacaaatagtaatctgaaaagattagtaacaaacctaga 19565091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 19893132 - 19893078
Alignment:
Q  55 gattagtaacaaacctagaggtacatatagtaatctgaaaagattagtaacaaact 110  Q
    ||||||||||||| ||||||| |||||||||||||| |||||||| ||||||||||    
T  19893132 gattagtaacaaatctagagg-acatatagtaatctaaaaagattggtaacaaact 19893078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 19893158 - 19893120
Alignment:
Q  70 tagaggtacatatagtaatctgaaaagattagtaacaaa 108  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  19893158 tagaggtgcagatagtaatctgaaaagattagtaacaaa 19893120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 13285957 - 13285897
Alignment:
Q  98 ttagtaacaaacttagatgaggattataaatagatgagaacattagaaaaatagggttaca 158  Q
    |||| |||||||| || ||  |||||||||||||||||| ||||||| || ||||||||||    
T  13285957 ttagaaacaaactcagttggtgattataaatagatgagaccattagagaattagggttaca 13285897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 190 - 307
Target Start/End: Complemental strand, 23974252 - 23974136
Alignment:
Q  190 aaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggta 289  Q
    |||||||| || |||||||||||| ||| |||| ||||||||| |||| |||||| |||||||||||||| |||||||| ||||||||||||||||||||    
T  23974252 aaactagggttatggagagaagagacaaagaggaatagcgagaagaacctagagaaagatttcaccgtaggaaatcatc-aattctgcaaactagaggta 23974154  T
Q  290 aggagggaagtttctatt 307  Q
    | | ||| ||||| ||||    
T  23974153 atggggggagtttttatt 23974136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 190 - 270
Target Start/End: Original strand, 19611885 - 19611965
Alignment:
Q  190 aaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaa 270  Q
    |||||||| |||||| ||||||||||||||||| ||||||||| |||| ||||||||||||||| |||||  |||||||||    
T  19611885 aaactagggttgtggggagaagaggcaaggagggatagcgagaagaacctagagagagatttcatcgtagggaatcatcaa 19611965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 18873841 - 18873786
Alignment:
Q  55 gattagtaacaaacctagaggtacatatagtaatctgaaaagattagtaacaaact 110  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  18873841 gattagtaacaaacttagaggtacatatagtaatctgaaaagattaataacaaact 18873786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 190 - 289
Target Start/End: Original strand, 25126199 - 25126298
Alignment:
Q  190 aaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggta 289  Q
    |||||||| || ||| |||||||||||| |||| ||||||||| |||| |||||||| |||| | ||||| |||||||||| |||   ||||||||||||    
T  25126199 aaactagggttatggtgagaagaggcaaagaggaatagcgagaagaacctagagagaaatttgaacgtaggaaatcatcaatttcgcaaaactagaggta 25126298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 15706931 - 15706878
Alignment:
Q  56 attagtaacaaacctagaggtacatatagtaatctgaaaagattagtaacaaact 110  Q
    |||||||||||||||||||  |||||||||||| |||||||||| ||||||||||    
T  15706931 attagtaacaaacctagaga-acatatagtaatgtgaaaagatttgtaacaaact 15706878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 14646039 - 14645996
Alignment:
Q  71 agaggtacatatagtaatctgaaaagattagtaacaaacttaga 114  Q
    |||||| ||||||||||| |||||||||||||||||||| ||||    
T  14646039 agaggtgcatatagtaatttgaaaagattagtaacaaacctaga 14645996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 19611752 - 19611806
Alignment:
Q  55 gattagtaacaaacctagaggtacatatagtaatctgaaaagattagtaacaaact 110  Q
    ||||||||||||||||||||| |||||||  ||||| |||||||| ||||||||||    
T  19611752 gattagtaacaaacctagagg-acatatataaatctaaaaagattggtaacaaact 19611806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 25126067 - 25126120
Alignment:
Q  55 gattagtaacaaacctagaggtacatatagtaatctgaaaagattagtaacaaact 110  Q
    ||||||||||||||||||||| |||| ||||||||| |||||||| ||||||||||    
T  25126067 gattagtaacaaacctagagg-acatttagtaatctaaaaagatt-gtaacaaact 25126120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 290
Target Start/End: Original strand, 18552294 - 18552376
Alignment:
Q  208 gaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaa 290  Q
    |||||||||||||||||||| |||| |||| | |||||| |||||| | ||| || ||||||||||  | |||||||| ||||    
T  18552294 gaagaggcaaggaggcatagtgagaagaacctggagagatatttcatcatagtaattcatcaaatttagtaaactagaagtaa 18552376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 290
Target Start/End: Complemental strand, 11153940 - 11153843
Alignment:
Q  190 aaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggta 289  Q
    |||||||| ||||||||| ||||| |||| ||||| | ||||| |||  ||||||||  ||||||||||  || |||||||||||| | |||||||||||    
T  11153940 aaactagggttgtggagaaaagagtcaag-aggcacaccgagaagaatctagagaga--tttcaccgtatgaattcatcaaattcttcgaactagaggta 11153844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 193 - 374
Target Start/End: Complemental strand, 17290751 - 17290570
Alignment:
Q  193 ctaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaagg 292  Q
    ||||| ||||||||||||||| |||||||| ||| ||||| |||| ||||||||||||| ||||||  |||| ||||| ||||  ||| |||||||||||    
T  17290751 ctagggttgtggagagaagagacaaggaggaataacgagaagaacctagagagagattttaccgtatgaaattatcaatttctcaaaattagaggtaagg 17290652  T
Q  293 agggaagtttctatttagcatatgggttgcatgaacatgt-ggtagtgaaggatctttgcttgctttcatgatcttttgatga 374  Q
     ||| ||| |||||| | |||| |||||| ||||| || | ||| ||||||| | |||| ||| |||||| || |||||||||    
T  17290651 -ggggagtctctattcaccataagggttgtatgaatatatgggttgtgaagggtttttgtttgttttcataattttttgatga 17290570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 81 - 158
Target Start/End: Complemental strand, 6465934 - 6465857
Alignment:
Q  81 atagtaatctgaaaagattagtaacaaacttagatgaggattataaatagatgagaacattagaaaaatagggttaca 158  Q
    |||||||||| |||| ||||||||||||||||| |||  |||||||||||| ||||||||||||||| ||| ||||||    
T  6465934 atagtaatctaaaaatattagtaacaaacttagctgattattataaatagacgagaacattagaaaattagagttaca 6465857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 267
Target Start/End: Complemental strand, 42147521 - 42147468
Alignment:
Q  214 gcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcat 267  Q
    ||||| ||||||||||||| |||| ||||||||||||||||| |||||||||||    
T  42147521 gcaagaaggcatagcgagaagaacctagagagagatttcaccatagaaaatcat 42147468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 42147681 - 42147627
Alignment:
Q  55 gattagtaacaaacctagaggtacatatagtaatctgaaaagattagtaacaaact 110  Q
    |||||||||||||| |||||| |||||||||||||| |||||||| ||||||||||    
T  42147681 gattagtaacaaacatagagg-acatatagtaatctaaaaagattggtaacaaact 42147627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 292
Target Start/End: Complemental strand, 40391492 - 40391402
Alignment:
Q  202 tggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaagg 292  Q
    |||||||||||| ||| || | ||||||||| |||| || |||||||||||| | ||||||| |||||| |||   |||||||||||||||    
T  40391492 tggagagaagagacaaagatgaatagcgagaagaacctaaagagagatttcaacttagaaaaccatcaatttcgcaaaactagaggtaagg 40391402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 190 - 292
Target Start/End: Complemental strand, 3593202 - 3593101
Alignment:
Q  190 aaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggta 289  Q
    |||||| | |||||||||||||||||||||||| |||||||||  ||| ||  |||||||||| |||||| |||||||| ||||| ||||||||||||||    
T  3593202 aaactaaggttgtggagagaagaggcaaggaggaatagcgagaataacctatggagagatttctccgtaggaaatcatc-aattcggcaaactagaggta 3593104  T
Q  290 agg 292  Q
    |||    
T  3593103 agg 3593101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 185 - 290
Target Start/End: Complemental strand, 6460127 - 6460022
Alignment:
Q  185 aaaggaaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactag 284  Q
    |||||||| |||| |||||||||||||||||||||||||||| ||||| | |  ||||||||||||||| ||||| |  |||||||||||||  || |||    
T  6460127 aaaggaaaatagggttgtggagagaagaggcaaggaggcataacgagaaggatctagagagagatttcatcgtaggatttcatcaaattctgttaattag 6460028  T
Q  285 aggtaa 290  Q
    ||||||    
T  6460027 aggtaa 6460022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 190 - 292
Target Start/End: Original strand, 15777305 - 15777406
Alignment:
Q  190 aaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggta 289  Q
    |||||||| || ||||||||| |||||| |||| ||||||||| |||| ||||||||||||||||||||| || | ||| | || |||||||||||||||    
T  15777305 aaactagggttatggagagaataggcaaagaggaatagcgagaagaacctagagagagatttcaccgtaggaatttatc-acttttgcaaactagaggta 15777403  T
Q  290 agg 292  Q
    |||    
T  15777404 agg 15777406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 199 - 289
Target Start/End: Original strand, 18705496 - 18705586
Alignment:
Q  199 ttgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggta 289  Q
    |||||||||||||||| |||||| ||||| |||| |||||||||||||||||||||| ||  |||||||||| |||   ||||||||||||    
T  18705496 ttgtggagagaagaggtaaggagacatagtgagaagaacgtagagagagatttcaccatatgaaatcatcaatttcgtaaaactagaggta 18705586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 121 - 292
Target Start/End: Original strand, 3262146 - 3262316
Alignment:
Q  121 ttataaatagatgagaacattagaaaaatagggttacaccgatcagagaaaa-gattagagaataaaaggaaactaggattgtggagagaagaggcaagg 219  Q
    ||||||||||| |||| ||||||| || |||||||||| | | || |||||| ||||||| ||| || |  || |||| ||||||||||||||| ||||     
T  3262146 ttataaatagaggagagcattagagaattagggttacaacaaacaaagaaaaagattaga-aatcaaggacaaatagggttgtggagagaagagacaaga 3262244  T
Q  220 aggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaagg 292  Q
    | ||||||||||  ||| |||||||||||||||| ||||| ||||||| | |||||  |||||| ||||||||    
T  3262245 aagcatagcgaggagaatgtagagagagatttcatcgtaggaaatcattagattctataaacta-aggtaagg 3262316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 284
Target Start/End: Original strand, 9733588 - 9733682
Alignment:
Q  190 aaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactag 284  Q
    |||||||| ||||||||| ||||| |||||||||| | ||||| |||  |||||||||||||||| |||| || |||||||||||| | ||||||    
T  9733588 aaactagggttgtggagaaaagagtcaaggaggcacaccgagaagaatctagagagagatttcacagtaggaattcatcaaattcttcgaactag 9733682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 190 - 330
Target Start/End: Original strand, 30993200 - 30993339
Alignment:
Q  190 aaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggta 289  Q
    |||||||| |||||||||||| |  ||||  | |||||  ||| |||| | |||||||| ||||| |||  || |||||||||||| |||||||||||||    
T  30993200 aaactagggttgtggagagaaaaaacaagatgacatagaaagaagaacctggagagagacttcactgtatgaattcatcaaattctccaaactagaggta 30993299  T
Q  290 aggagggaagtttctatttagcatatgggttgcatgaacat 330  Q
    ||| ||| ||| |||||| | |||| |||||| ||||||||    
T  30993300 agg-ggggagtctctattcaccataagggttgtatgaacat 30993339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 9733455 - 9733505
Alignment:
Q  55 gattagtaacaaacctagaggtacatatagtaatctgaaaagattagtaaca 106  Q
    |||||||||||||||| |||| |||||||||||||| |||||||| ||||||    
T  9733455 gattagtaacaaacctggagg-acatatagtaatctaaaaagattggtaaca 9733505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 18705354 - 18705408
Alignment:
Q  55 gattagtaacaaacctagaggtacatatagtaatctgaaaagattagtaacaaact 110  Q
    ||||||||||||| ||||||| |||||||||||||| |||| ||| ||||||||||    
T  18705354 gattagtaacaaagctagagg-acatatagtaatctaaaaatattggtaacaaact 18705408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 3290918 - 3290882
Alignment:
Q  71 agaggtacatatagtaatctgaaaagattagtaacaa 107  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  3290918 agaggtgcatatagtaatttgaaaagattagtaacaa 3290882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 343
Target Start/End: Original strand, 18534434 - 18534535
Alignment:
Q  240 agagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggagggaagtttctatttagcatatgggttgcatgaacatgtggtagtg 339  Q
    |||||||||||  ||| ||| |||||||||| |||   ||||||||||||||  ||| ||| |||||| | |||| || ||| |||||||| ||||||||    
T  18534434 agagagagattcaaccataggaaatcatcaatttcgcaaaactagaggtaag--ggggagtctctattcaccataaggattgtatgaacatatggtagtg 18534531  T
Q  340 aagg 343  Q
    ||||    
T  18534532 aagg 18534535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 224 - 327
Target Start/End: Complemental strand, 1940 - 1839
Alignment:
Q  224 atagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggagggaagtttctatttagcatatgggttgca 323  Q
    ||||||||| |||| || |||||||||||||||||| |||||||| |||||||||||||||||||| || ||| ||| |||||||| |||| |||||| |    
T  1940 atagcgagaagaacctacagagagatttcaccgtaggaaatcatc-aattctgcaaactagaggtatgg-ggggagtctctatttaccataagggttgta 1843  T
Q  324 tgaa 327  Q
    ||||    
T  1842 tgaa 1839  T

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Target: scaffold0281; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 2065 - 2012
Alignment:
Q  56 attagtaacaaacctagaggtacatatagtaatctgaaaagattagtaacaaact 110  Q
    ||||||||||||| |||||| | |||||||||||| |||||||| ||||||||||    
T  2065 attagtaacaaacttagaggaa-atatagtaatctaaaaagattggtaacaaact 2012  T

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Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 190 - 321
Target Start/End: Original strand, 18147568 - 18147698
Alignment:
Q  190 aaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggta 289  Q
    |||||||| ||||||||| ||||| |||| ||||| | ||||| |||  |||||||||||||| |||||| || |||||||||||| | |||||||||||    
T  18147568 aaactagggttgtggagaaaagagtcaag-aggcacaccgagaagaatctagagagagatttcgccgtaggaattcatcaaattctccgaactagaggta 18147666  T
Q  290 aggagggaagtttctatttagcatatgggttg 321  Q
    | | ||| ||| |||||| | |||| ||||||    
T  18147667 atggggggagtctctattcatcataagggttg 18147698  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 217
Target Start/End: Complemental strand, 22949289 - 22949172
Alignment:
Q  100 agtaacaaacttagatgaggattataaatagatgagaacattagaaaaatagggttacaccgatcagagaaaagattagagaataaaaggaaactaggat 199  Q
    |||| ||||||||| | | ||||| ||||||||||||||||||| |||||| ||||||| | |   ||||||||||||||||  |||   |||||||| |    
T  22949289 agtatcaaacttagctaatgattacaaatagatgagaacattaggaaaataaggttacaacaaatggagaaaagattagagatcaaagaaaaactagggt 22949190  T
Q  200 tgtggagagaagaggcaa 217  Q
    |||||||| |||||||||    
T  22949189 tgtggagaaaagaggcaa 22949172  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 3312900 - 3312845
Alignment:
Q  55 gattagtaacaaacctagaggtacatatagtaatctgaaaagattagtaacaaact 110  Q
    |||||||||||||| |||||||| | |||||||||| |||||||||||||||||||    
T  3312900 gattagtaacaaacatagaggtaaacatagtaatctaaaaagattagtaacaaact 3312845  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 297
Target Start/End: Original strand, 11508678 - 11508781
Alignment:
Q  194 taggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaagga 293  Q
    |||| ||||||||| |||||  ||||||||| | ||||| |||  ||||||||||||| || |||| || |||||||||||| | ||||||||||||||     
T  11508678 tagggttgtggagaaaagagttaaggaggcaaaccgagaagaatctagagagagattttacagtagtaattcatcaaattctccgaactagaggtaaggg 11508777  T
Q  294 ggga 297  Q
    ||||    
T  11508778 ggga 11508781  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 202 - 297
Target Start/End: Complemental strand, 32945463 - 32945370
Alignment:
Q  202 tggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggaggga 297  Q
    |||||||||||||||| |||| ||||| ||| |||| ||||||||  ||||| ||||| |||||||||| |||   ||||||||||||||| ||||    
T  32945463 tggagagaagaggcaaagaggaatagccagaagaacttagagaga--tttcaacgtaggaaatcatcaatttcgcaaaactagaggtaagggggga 32945370  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 34707355 - 34707314
Alignment:
Q  69 ctagaggtacatatagtaatctgaaaagattagtaacaaact 110  Q
    ||||||||||| ||||||| ||||||||||||||||||||||    
T  34707355 ctagaggtacaaatagtaacctgaaaagattagtaacaaact 34707314  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 11508515 - 11508554
Alignment:
Q  70 tagaggtacatatagtaatctgaaaagattagtaacaaac 109  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  11508515 tagaggtgcagatagtaatctgaaaagattagtaacaaac 11508554  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 11508541 - 11508595
Alignment:
Q  55 gattagtaacaaacctagaggtacatatagtaatctgaaaagattagtaacaaact 110  Q
    |||||||||||||||| |||| |||||||||||||| |||| ||| ||||||||||    
T  11508541 gattagtaacaaacctggagg-acatatagtaatctaaaaaaattggtaacaaact 11508595  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 292
Target Start/End: Complemental strand, 33721354 - 33721260
Alignment:
Q  199 ttgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttc-accgtagaaaatcatcaaattctgc-aaactagaggtaagg 292  Q
    ||||||||| |||||  |||||| |||||||||| |||| |||||||||||||| || ||||||| |||||  ||||||| ||||||||| |||||    
T  33721354 ttgtggagaaaagagataaggagacatagcgagaagaacctagagagagatttcaacggtagaaattcatc-tattctgcaaaactagagataagg 33721260  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 112
Target Start/End: Complemental strand, 33721531 - 33721489
Alignment:
Q  70 tagaggtacatatagtaatctgaaaagattagtaacaaactta 112  Q
    |||||||||| ||| |||||| |||||||||||||||||||||    
T  33721531 tagaggtacaaataataatctcaaaagattagtaacaaactta 33721489  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 193 - 292
Target Start/End: Original strand, 39435924 - 39436023
Alignment:
Q  193 ctaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaagg 292  Q
    |||||||| ||||||||||| ||||| ||||||||  ||| |||  || |||||||||||||||||| |||||||||| |||   |||||||||||||||    
T  39435924 ctaggattttggagagaagatgcaagaaggcatagtaagaagaatctaaagagagatttcaccgtaggaaatcatcaatttcacaaaactagaggtaagg 39436023  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 21143764 - 21143817
Alignment:
Q  56 attagtaacaaacctagaggtacatatagtaatctgaaaagattagtaacaaact 110  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  21143764 attagtaacaaacctagagg-acatatagtaatctgaaaagattggtaacaaact 21143817  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 321
Target Start/End: Complemental strand, 39176519 - 39176441
Alignment:
Q  243 gagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggagggaagtttctatttagcatatgggttg 321  Q
    ||||||||||||| |||||||||||||| |||   ||||||||||||| | ||||||| |||||| | |||| ||||||    
T  39176519 gagagatttcaccatagaaaatcatcaatttcgcaaaactagaggtaatgggggaagtctctattcatcataagggttg 39176441  T

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Target: scaffold0323 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 184 - 343
Target Start/End: Complemental strand, 16383 - 16223
Alignment:
Q  184 aaaaggaaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgt-agaaa--atcatcaaattctgcaaa 280  Q
    ||||| |||||||| || |||||||||||| ||||||||||||| |||| |||| ||||||||  ||  | ||| |||||  |||||||||||||  |||    
T  16383 aaaagaaaactagggttttggagagaagagacaaggaggcatagtgagaagaac-tagagaga-tttaaatcgtaagaaatcatcatcaaattctctaaa 16286  T
Q  281 ctagaggtaaggagggaagtttctatttagcatatgggttgcatgaacatgt-ggtagtgaagg 343  Q
    |||||||||||| ||||||| |||||| | || | |||||| |||| ||||| |||||||||||    
T  16285 ctagaggtaagg-gggaagtctctattcaccaaaagggttgtatgatcatgtgggtagtgaagg 16223  T

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Target: scaffold0978 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 3067 - 3013
Alignment:
Q  55 gattagtaacaaacctagaggtacatatagtaatctgaaaagattagtaacaaact 110  Q
    ||||||||||||| ||||||  ||||||||||||||||||||| | ||||||||||    
T  3067 gattagtaacaaatctagaga-acatatagtaatctgaaaagagttgtaacaaact 3013  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 171251 - 171294
Alignment:
Q  71 agaggtacatatagtaatctgaaaagattagtaacaaacttaga 114  Q
    |||||| ||||||||||| |||||||||||||||||||| ||||    
T  171251 agaggtgcatatagtaatttgaaaagattagtaacaaacctaga 171294  T

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