View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8903_low_44 (Length: 361)

Name: NF8903_low_44
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8903_low_44
NF8903_low_44
[»] chr4 (4 HSPs)
chr4 (92-344)||(24041762-24042023)
chr4 (13-95)||(24042097-24042179)
chr4 (181-275)||(52998827-52998921)
chr4 (230-275)||(13209209-13209254)
[»] chr6 (2 HSPs)
chr6 (162-275)||(21907238-21907352)
chr6 (164-205)||(33560120-33560161)
[»] chr7 (2 HSPs)
chr7 (181-275)||(3733609-3733703)
chr7 (210-263)||(23016341-23016394)
[»] chr1 (5 HSPs)
chr1 (164-275)||(13124165-13124278)
chr1 (193-275)||(13159387-13159469)
chr1 (235-275)||(36977191-36977231)
chr1 (230-275)||(9331947-9331992)
chr1 (230-275)||(25796180-25796225)
[»] scaffold1668 (1 HSPs)
scaffold1668 (230-275)||(624-669)
[»] chr5 (1 HSPs)
chr5 (190-263)||(35141066-35141139)
[»] scaffold0007 (1 HSPs)
scaffold0007 (121-153)||(218402-218434)
[»] chr8 (1 HSPs)
chr8 (235-275)||(11221667-11221707)


Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 92 - 344
Target Start/End: Complemental strand, 24042023 - 24041762
Alignment:
Q  92 gaaagatgcttatataaagtgttctttgcacacataaatattcattcaaaatttggtagttccaaagggaagtctcacacctcctcaaattgtttttaga 191  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24042023 gaaagatacttatataaagtgttctttgcacacataaatattcattcaaaatttggtagttccaaagggaagtctcacacctcctcaaattgtttttaga 24041924  T
Q  192 gtatgttttgtttttctatgatgatgtattttgtaatgatgactaactaaacaccttttgattagggttctacgatgaacctc-------ttgttggaat 284  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||       ||||||||||    
T  24041923 gtatgttttgtttttcgatgatgatgtattttataatgatgactaactaaacaccttttgattagggttctatgatgaacctctttttatttgttggaat 24041824  T
Q  285 tcattaataaaatttatttattcagt--tattatctgagatatatttaattctcatatgttt 344  Q
    ||||||||||||||||||||||||||  ||||||||||| ||||||||||| ||||||||||    
T  24041823 tcattaataaaatttatttattcagttatattatctgagttatatttaattttcatatgttt 24041762  T

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Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 24042179 - 24042097
Alignment:
Q  13 cctgtgtgttgggcgtatagctacgagaacatgtgatttatgaagcactaaccacgcaccctccgcacacgttaggcgagaaa 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24042179 cctgtgtgttgggcgtatagctacgagaacatgtgatttatgaagcactaaccacgcaccctccgcacacgttaggcgagaaa 24042097  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 275
Target Start/End: Original strand, 52998827 - 52998921
Alignment:
Q  181 ttgtttttagagtatgttttgtttttctatgatgatgtattttgtaatgatgactaactaaacaccttttgattagggttctacgatgaacctct 275  Q
    ||||| |||||||||||||| ||| | |   || ||||||||||| |  |||| | ||||||||||||||||||||| ||||| |||||| ||||    
T  52998827 ttgttcttagagtatgttttatttcttttgtattatgtattttgttacaatgagtgactaaacaccttttgattaggtttctatgatgaatctct 52998921  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 275
Target Start/End: Original strand, 13209209 - 13209254
Alignment:
Q  230 atgactaactaaacaccttttgattagggttctacgatgaacctct 275  Q
    |||| ||||||||||||||||||||| ||||||| || ||||||||    
T  13209209 atgaataactaaacaccttttgattaaggttctaagacgaacctct 13209254  T

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Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 162 - 275
Target Start/End: Original strand, 21907238 - 21907352
Alignment:
Q  162 agtctcacacctcctcaaatt-gtttttagagtatgttttgtttttctatgatgatgtattttgtaatgatgactaactaaacaccttttgattagggtt 260  Q
    |||||||||||||||| |||| ||| ||||||||| ||||| |||||| | || ||||||||||| || | || |||||||| || ||||||||| ||||    
T  21907238 agtctcacacctcctccaatttgttcttagagtatattttggttttctttaattatgtattttgttatcaagagtaactaaaaactttttgattatggtt 21907337  T
Q  261 ctacgatgaacctct 275  Q
    ||| |||||||||||    
T  21907338 ctaagatgaacctct 21907352  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 33560120 - 33560161
Alignment:
Q  164 tctcacacctcctcaaattgtttttagagtatgttttgtttt 205  Q
    |||||||||||||||| || ||||||||||||||||||||||    
T  33560120 tctcacacctcctcaatttttttttagagtatgttttgtttt 33560161  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 275
Target Start/End: Original strand, 3733609 - 3733703
Alignment:
Q  181 ttgtttttagagtatgttttgtttttctatgatgatgtattttgtaatgatgactaactaaacaccttttgattagggttctacgatgaacctct 275  Q
    |||| ||||||||||||||| ||| | | |||| |||| |||||| || |||| ||||||||||||||||||||| |||  || |||||||||||    
T  3733609 ttgtgtttagagtatgttttatttctttgtgattatgtcttttgttatcatgagtaactaaacaccttttgattaaggtattatgatgaacctct 3733703  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 263
Target Start/End: Original strand, 23016341 - 23016394
Alignment:
Q  210 tgatgatgtattttgtaatgatgactaactaaacaccttttgattagggttcta 263  Q
    |||| ||||||||||| |  |||  |||||||||||||||||||||||||||||    
T  23016341 tgattatgtattttgttaccatgggtaactaaacaccttttgattagggttcta 23016394  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 275
Target Start/End: Complemental strand, 13124278 - 13124165
Alignment:
Q  164 tctcacacctcctcaaatt--gtttttagagtatgttttgtttttctatgatgatgtattttgtaatgatgactaactaaacaccttttgattagggttc 261  Q
    |||||||||||||||| ||  ||| ||| | |||||||| ||| ||| |||| ||||||||||| |  |||| |||||||||| ||||| ||| || |||    
T  13124278 tctcacacctcctcaacttttgttcttataatatgttttatttctctctgattatgtattttgttaccatgaataactaaacatcttttaatttggattc 13124179  T
Q  262 tacgatgaacctct 275  Q
     |||||||||||||    
T  13124178 aacgatgaacctct 13124165  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 275
Target Start/End: Complemental strand, 13159469 - 13159387
Alignment:
Q  193 tatgttttgtttttctatgatgatgtattttgtaatgatgactaactaaacaccttttgattagggttctacgatgaacctct 275  Q
    |||||||| ||| | | |||| ||||||||||| |  |||| |||||||||| ||||| |||||||||| |||||||||||||    
T  13159469 tatgttttatttctttctgattatgtattttgttaccatgagtaactaaacatcttttaattagggttcaacgatgaacctct 13159387  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 36977231 - 36977191
Alignment:
Q  235 taactaaacaccttttgattagggttctacgatgaacctct 275  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  36977231 taactaaacacctattgattagggttctatgatgaacctct 36977191  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 275
Target Start/End: Original strand, 9331947 - 9331992
Alignment:
Q  230 atgactaactaaacaccttttgattagggttctacgatgaacctct 275  Q
    |||||||||||||||||||  |||||| |||||| |||||||||||    
T  9331947 atgactaactaaacaccttaagattagagttctaagatgaacctct 9331992  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 275
Target Start/End: Complemental strand, 25796225 - 25796180
Alignment:
Q  230 atgactaactaaacaccttttgattagggttctacgatgaacctct 275  Q
    |||||||| ||||||| |||| |||||||||||| |||||||||||    
T  25796225 atgactaattaaacacatttttattagggttctaagatgaacctct 25796180  T

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Target: scaffold1668 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1668
Description:

Target: scaffold1668; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 275
Target Start/End: Original strand, 624 - 669
Alignment:
Q  230 atgactaactaaacaccttttgattagggttctacgatgaacctct 275  Q
    |||| ||||||||||||||||||||||||||||| ||| |||||||    
T  624 atgagtaactaaacaccttttgattagggttctatgatcaacctct 669  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 263
Target Start/End: Original strand, 35141066 - 35141139
Alignment:
Q  190 gagtatgttttgtttttctatgatgatgtattttgtaatgatgactaactaaacaccttttgattagggttcta 263  Q
    |||||||||| ||||||| ||||| |||||||  || || |||| ||||||||||||||  ||||||| |||||    
T  35141066 gagtatgtttcgtttttccatgattatgtattgagttatcatgagtaactaaacaccttaagattaggattcta 35141139  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 218402 - 218434
Alignment:
Q  121 acacataaatattcattcaaaatttggtagttc 153  Q
    |||||||||||||||||||||||||||| ||||    
T  218402 acacataaatattcattcaaaatttggtggttc 218434  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 11221707 - 11221667
Alignment:
Q  235 taactaaacaccttttgattagggttctacgatgaacctct 275  Q
    ||||||||||| |||||||||||||||||  ||||||||||    
T  11221707 taactaaacacattttgattagggttctaatatgaacctct 11221667  T

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