View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8903_low_47 (Length: 350)
Name: NF8903_low_47
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 17442251 - 17441989
Alignment:
| Q |
19 |
ttggaattgatatcttagctgagatatatttcctttagttttacacatgatctgtgaattttctaatttttccacatggattattaaactgttaaataaa |
118 |
Q |
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| T |
17442251 |
ttggcattgatatcttagctgagatatatttcctttagttttacacatgatctgtgaattttctaatttttccacatggatcattgaactgttaaataaa |
17442152 |
T |
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| Q |
119 |
atcagtaaatcagtaggatgacaaaatctaattgattggttggattctttaatgattaaactataatgcataaattttttgacttgtagatagatataaa |
218 |
Q |
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| T |
17442151 |
atcagtaaattagtaggatgacaaaatctaattgattggttggattctttaatgattaaactataatgcataaattttttgacttgtagatagatataaa |
17442052 |
T |
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| Q |
219 |
aaagtcataaatagatggttttactatagattgagtaagataaagctacagtaataagtaaga |
281 |
Q |
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| T |
17442051 |
aaagtcataaatagatgattttattatagattgagtaagataaagctacagtaataaataaga |
17441989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 274 - 336
Target Start/End: Complemental strand, 17441346 - 17441284
Alignment:
| Q |
274 |
aagtaagaaaccgaatatatggctaaaacaagtatatttatataacaggattaatgttgaaga |
336 |
Q |
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| T |
17441346 |
aagtaagaaaccgaatatatggctaaaacaaatatatttatataacaggattaatgttgaaga |
17441284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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