View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8903_low_48 (Length: 349)
Name: NF8903_low_48
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_48 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 29053106 - 29052770
Alignment:
| Q |
1 |
tgccccagaaaactccaacactgcagctgttaacacagcttgcctaagtgacaatgcaccagatccaacagaagttcccattgcatttgcaacatcatta |
100 |
Q |
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| T |
29053106 |
tgcccctgaaaactccaacactgcagctgtcaacacagcttgcctaagtgacaatgcaccagatccaactgaagttcccattgcatttgcaacatcatta |
29053007 |
T |
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| Q |
101 |
gcaccaatgttccaagccatgtaaaatccaaacaaaagtgttccatatgataacatctttgtcttcaatgccaaaccttgtcctaaagatgtcataaaca |
200 |
Q |
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| T |
29053006 |
gcaccaatgttccaagccatgtaaaatccaaacaaaagtgttccatatgataacatctttgtcttcaatgccaaaccttgtcctaaagatgtcataaaca |
29052907 |
T |
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| Q |
201 |
aaggaaaaacaagtgcagccattactatacatattgttatagcagaagctgttcttgatgatatgtgaaatgctttagccattcctgatacttcatcatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29052906 |
aaggaaaaacaagtgcagccattactatacatattgttatagcagaagctgttcttgatgatatgtgaaatgctttagccattcctgatacttcatcatt |
29052807 |
T |
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| Q |
301 |
attctctccgttttctgttgcagcatgttggtgatgt |
337 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
29052806 |
attctccccgttttctgttgcagcatgttggtgatgt |
29052770 |
T |
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