View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8903_low_5 (Length: 866)
Name: NF8903_low_5
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 811; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 811; E-Value: 0
Query Start/End: Original strand, 19 - 854
Target Start/End: Complemental strand, 51934307 - 51933472
Alignment:
| Q |
19 |
actccccccagtaagcaagctgagcttggcccaaacaatgtaccattttatcagtggctatacggcattggtatttgtgattcctttcatttctttttat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51934307 |
actccccccagtaagcaagctgagcttggcccaaacaatgtaccattttatcagtggctatacggcattggtatttgtgattcctttcatttctttttat |
51934208 |
T |
|
| Q |
119 |
gccttcttatcattggcatcctatagttgttgagagggtatgtaagatgctatactgcatcacaagtttttatagttaaannnnnnncttatggcatagg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
51934207 |
gccttcttatcattggcatcctatagttgttgagagggtatgtaagatgctatactgcatcacaagtttttatagttaaatttttttcttatggcatagg |
51934108 |
T |
|
| Q |
219 |
ttgctgggacagaagatggtataaaagagccacaagctacattttctgcttgtttcggtgcagcatttataatgatgcatcctaccaaatatgctacgat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51934107 |
ttgctgggacagaagatggtataaaagagccacaagctacattttctgcttgtttcggtgcagcatttataatgatgcatcctaccaaatatgctacgat |
51934008 |
T |
|
| Q |
319 |
gctggctgagaagatgcagaagcatggagctactggatggcttgtcaatactggctggtcagggggaaggtgtgaactctaacaatgcaactgcatatat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51934007 |
gctggctgagaagatgcagaagcatggagctactggatggcttgtcaatactggctggtcagggggaaggtgtgaactctaacaatgcaactgcatatat |
51933908 |
T |
|
| Q |
419 |
ggtagttttttcctcactaaaactaatttttcttccctgtaatttggcagttatggatcaggcaatcggatcaagttagcgtacacgaggaaaatcattg |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51933907 |
ggtagttttttcctcactaaaactaatttttcttccctgtaatttggcagttatggatcaggcaatcggatcaagttagcgtacacgaggaaaatcattg |
51933808 |
T |
|
| Q |
519 |
atgccattcattctggcagtctcttgaatgcgaaatacattaaaactgaagtgtttgggcttgagatcccaacagcaatagatggagtcccatctgaaat |
618 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51933807 |
atgccattcattctggctgtctcttgaatgcgaaatacattaaaactgaagtgtttgggcttgagatcccaacagcaatagatggagtcccatctgaaat |
51933708 |
T |
|
| Q |
619 |
cttggaccccataaacacggttagttaatacttaatattcagtatataagttttatacaactatatcacaatcttgaaggtatgaactgtacttgcatga |
718 |
Q |
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| T |
51933707 |
cttggaccccataaacacggttagttaatacttaatattcagtatataagttttatacaactatatcacaatcttgaaggtatgaactgtacttgcatga |
51933608 |
T |
|
| Q |
719 |
actgcagtggtttgaaaagaaggcctaccaagatacacttctgaaattagctggtctattcaagaacaattttgatggatttgtgagctacaagataggg |
818 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51933607 |
actgcagtggtttgaaaagaaggcctaccaagatacacttctgaaattagctggtctattcaagaacaattttgatggatttgtgagctacaagataggg |
51933508 |
T |
|
| Q |
819 |
aaagatcaaaagttaactgaagagattgtctctgct |
854 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
51933507 |
aaagatcaaaagttaactgaagagattgtctctgct |
51933472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 216 - 389
Target Start/End: Complemental strand, 28136397 - 28136224
Alignment:
| Q |
216 |
aggttgctgggacagaagatggtataaaagagccacaagctacattttctgcttgtttcggtgcagcatttataatgatgcatcctaccaaatatgctac |
315 |
Q |
| |
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|||| ||||| |||||||| |||||||| ||||||||||| |||||||| |||||||| || |||||||| |||||| | |||||||| || ||||| | |
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| T |
28136397 |
aggtggctggcacagaagagggtataaaggagccacaagcaacattttcggcttgttttggagcagcattcataatgctacatcctacaaagtatgcagc |
28136298 |
T |
|
| Q |
316 |
gatgctggctgagaagatgcagaagcatggagctactggatggcttgtcaatactggctggtcagggggaaggt |
389 |
Q |
| |
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||||| ||||| || ||||| || ||||| ||||||||||||||||| || ||||| ||||| || ||||||| |
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| T |
28136297 |
catgcttgctgaaaaaatgcaaaatcatggtgctactggatggcttgttaacactggttggtctggtggaaggt |
28136224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 4e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 215 - 378
Target Start/End: Complemental strand, 12994452 - 12994289
Alignment:
| Q |
215 |
taggttgctgggacagaagatggtataaaagagccacaagctacattttctgcttgtttcggtgcagcatttataatgatgcatcctaccaaatatgcta |
314 |
Q |
| |
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||||| ||||| || || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||| | || ||||| || |||||| |
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| T |
12994452 |
taggtggctggtactgaggatggtataaaggagccacaagcaacattttctgcttgtttcggtgcagcattcataatgttacaccctacaaagtatgctg |
12994353 |
T |
|
| Q |
315 |
cgatgctggctgagaagatgcagaagcatggagctactggatggcttgtcaatactggctggtc |
378 |
Q |
| |
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| ||||| ||||| |||||| ||| ||||| || || || |||||||| || ||||| ||||| |
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| T |
12994352 |
caatgcttgctgaaaagatggagagtcatggtgcaacagggtggcttgttaacactggttggtc |
12994289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 215 - 378
Target Start/End: Complemental strand, 13069101 - 13068938
Alignment:
| Q |
215 |
taggttgctgggacagaagatggtataaaagagccacaagctacattttctgcttgtttcggtgcagcatttataatgatgcatcctaccaaatatgcta |
314 |
Q |
| |
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||||| ||||| || || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||| | || ||||| || |||||| |
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| T |
13069101 |
taggtggctggtactgaggatggtataaaggagccacaagcaacattttctgcttgtttcggtgcagcattcataatgttacaccctacaaagtatgctg |
13069002 |
T |
|
| Q |
315 |
cgatgctggctgagaagatgcagaagcatggagctactggatggcttgtcaatactggctggtc |
378 |
Q |
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| T |
13069001 |
caatgcttgctgaaaagatggagagtcatggtgcaacagggtggcttgttaacactggttggtc |
13068938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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