View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8903_low_51 (Length: 346)
Name: NF8903_low_51
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_51 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 20286457 - 20286126
Alignment:
| Q |
1 |
agaccggaaaggaaaagggaagagttgttaccagtagcgtgttgtttgatccagcttgatg-aaaagcttcgttgaaaaaagcggtatccgtgaaaccga |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
20286457 |
agaccggaaaggaaaagggaagagttgttaccggtagcgtgttgtttgatccagcttgatggaaaagcttcgttgaaaaaagcggtatccgtgaaaccga |
20286358 |
T |
|
| Q |
100 |
gccggtgccaaataatggaggagaaacgacaatcccgaaggcaatgcataatggtttcttcgtcttctccacatctggaacaggtggaagagggggccat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20286357 |
gccggtgccaaataatggaggagaaacgacaatcccgaaggcaatgcataatggtttcttcgtcttctccacatctggaacaggtggaagagggggccat |
20286258 |
T |
|
| Q |
200 |
atgacggtgttcgagaagagacatagtcgggatggcgttatggcaagctaaccaaatcaacagtttgaatttttcaggggactttagcttccatatccaa |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
20286257 |
atgacggtgttcgagaagagacatagtcgggatggcgttatggcaagctaaccaaatgaacagtttgaatttttcaggggactttagcttccatatccaa |
20286158 |
T |
|
| Q |
300 |
gaccaagagtgggtagaaagcggattgatgtc |
331 |
Q |
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||||||||||||||||||||||||||| |||| |
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| T |
20286157 |
gaccaagagtgggtagaaagcggattggtgtc |
20286126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 277
Target Start/End: Complemental strand, 24530432 - 24530274
Alignment:
| Q |
119 |
ggagaaacgacaatcccgaaggcaatgcataatggtttcttcgtcttctccacatctggaacaggtggaagagggggccatatgacggtgttcgagaaga |
218 |
Q |
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|||||||| |||||| ||||||||||||| || ||||| ||||| || |||||||| |||||||| | |||||| || || ||| |||| | || || |
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| T |
24530432 |
ggagaaactacaatcacgaaggcaatgcaggatagtttcatcgtcctccccacatctcgaacaggtagtagagggagctatgtgatggtgatggatcagg |
24530333 |
T |
|
| Q |
219 |
gacatagtcgggatggcgttatggcaagctaaccaaatcaacagtttgaatttttcagg |
277 |
Q |
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|| | || || | ||||| |||||| ||| |||||||||||| |||||||||||||| |
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| T |
24530332 |
gataaagctggaacagcgttgtggcaaactagccaaatcaacagcttgaatttttcagg |
24530274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 11898756 - 11898425
Alignment:
| Q |
1 |
agaccggaaaggaaaagggaagagttgttaccagtagcgtgttgtttgatccagcttgatg-aaaagcttcgttgaaaaaagcggtatccgtgaaaccga |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11898756 |
agaccggaaaggaaaagggaagagttgttaccggtagcgtgttgtttgatccagcttgatggaaaagcttcgttgaaaaaagcggtatccgtgaaaccga |
11898657 |
T |
|
| Q |
100 |
gccggtgccaaataatggaggagaaacgacaatcccgaaggcaatgcataatggtttcttcgtcttctccacatctggaacaggtggaagagggggccat |
199 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11898656 |
gccggtgccaaataatggaggagaaacgacaataccgaaggcaatgcataatggtttcttcgtcttctccacatctggaacaggtggaagagggggccat |
11898557 |
T |
|
| Q |
200 |
atgacggtgttcgagaagagacatagtcgggatggcgttatggcaagctaaccaaatcaacagtttgaatttttcaggggactttagcttccatatccaa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11898556 |
atgacggtgttcgagaagagacatagtcgggatggcgttatggcaagctaaccaaataaacagtttgaatttttcaggggactttagcttccatatccaa |
11898457 |
T |
|
| Q |
300 |
gaccaagagtgggtagaaagcggattgatgtc |
331 |
Q |
| |
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||||||||||||||||||||||||||| |||| |
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| T |
11898456 |
gaccaagagtgggtagaaagcggattggtgtc |
11898425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 105 - 304
Target Start/End: Original strand, 26431342 - 26431541
Alignment:
| Q |
105 |
tgccaaataatggaggagaaacgacaatcccgaaggcaatgcataatggtttcttcgtcttctccacatctggaacaggtggaagagggggccatatgac |
204 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||| || || || ||||| |||| |
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| T |
26431342 |
tgccaaatgatggaagagaaacgacagtcccgaaggcaatgcataatggtttcttcgtcttcgccacatcgcgaacaggttgaggaaggagccatctgac |
26431441 |
T |
|
| Q |
205 |
ggtgttcgagaagagacatagtcgggatggcgttatggcaagctaaccaaatcaacagtttgaatttttcaggggactttagcttccatatccaagacca |
304 |
Q |
| |
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|||| | |||||| || | ||||||||| || || |||||||| |||||||||||||| ||||||||||| | || |||||||||||||||||||||||| |
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| T |
26431442 |
ggtggtggagaagtgataaagtcgggatcgcattgtggcaagccaaccaaatcaacagattgaatttttctgcggtctttagcttccatatccaagacca |
26431541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 23131124 - 23131455
Alignment:
| Q |
1 |
agaccggaaaggaaaagggaagagttgttaccagtagcgtgttgtttgatccagcttgatg-aaaagcttcgttgaaaaaagcggtatccgtgaaaccga |
99 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23131124 |
agaccagaaaggaaaagggaagagttgttaccagtagcgtgttgtttgatccagctttatggaaaagcttcgttgaaaaaagcggtatccgtgaaaccga |
23131223 |
T |
|
| Q |
100 |
gccggtgccaaataatggaggagaaacgacaatcccgaaggcaatgcataatggtttcttcgtcttctccacatctggaacaggtggaagagggggccat |
199 |
Q |
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|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23131224 |
gccggtgccaaataattgaggagaaatgacaatcccgaaggcaatgcataatggtttcttcgtcttctccacatctggaacaggtggaagagggggccat |
23131323 |
T |
|
| Q |
200 |
atgacggtgttcgagaagagacatagtcgggatggcgttatggcaagctaaccaaatcaacagtttgaatttttcaggggactttagcttccatatccaa |
299 |
Q |
| |
|
|||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23131324 |
atgacggtgttcgaaaagagacattgtcggaatggcgttatggcaagctaaccaaatcaacagtttgaatttttcaggggactttagcttccataaccaa |
23131423 |
T |
|
| Q |
300 |
gaccaagagtgggtagaaagcggattgatgtc |
331 |
Q |
| |
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||||||||||||||||||||||||||| |||| |
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| T |
23131424 |
gaccaagagtgggtagaaagcggattggtgtc |
23131455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 65 - 331
Target Start/End: Original strand, 14652284 - 14652550
Alignment:
| Q |
65 |
agcttcgttgaaaaaagcggtatccgtgaaaccgagccggtgccaaataatggaggagaaacgacaatcccgaaggcaatgcataatggtttcttcgtct |
164 |
Q |
| |
|
|||||| |||| |||| || |||| || ||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
14652284 |
agcttcattgagaaaaacgttatcagtaaaaccgagctggtaccaaataatggaggagaagcgacaatcccgaaggcaatgcattatggtttcttcgtct |
14652383 |
T |
|
| Q |
165 |
tctccacatctggaacaggtggaagagggggccatatgacggtgttcgagaagagacatagtcgggatggcgttatggcaagctaaccaaatcaacagtt |
264 |
Q |
| |
|
||||||||||| |||||||| |||||||| |||||||| ||||||| ||||||||| | ||||||||| |||||||||||||| | |||||||||||||| |
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|
| T |
14652384 |
tctccacatctcgaacaggtagaagagggagccatatgtcggtgttggagaagagatagagtcgggatcgcgttatggcaagccagccaaatcaacagtt |
14652483 |
T |
|
| Q |
265 |
tgaatttttcaggggactttagcttccatatccaagaccaagagtgggtagaaagcggattgatgtc |
331 |
Q |
| |
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|||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| |||||||| |
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|
| T |
14652484 |
tgaatttttcgggggattttagcttccatatccaagaccaagagtgggtagatggcgggttgatgtc |
14652550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 262
Target Start/End: Complemental strand, 53321340 - 53321255
Alignment:
| Q |
177 |
gaacaggtggaagagggggccatatgacggtgttcgagaagagacatagtcgggatggcgttatggcaagctaaccaaatcaacag |
262 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||| | |||||| || | ||||||||| || || |||||||| | |||||||||||| |
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| T |
53321340 |
gaacaggtggaggagggagccatttgacggtgatggagaagtgataaagtcgggatcgcattgtggcaagccagccaaatcaacag |
53321255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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