View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8903_low_53 (Length: 334)
Name: NF8903_low_53
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 360580 - 360898
Alignment:
| Q |
1 |
gcaacaacaacacctctccacattggtactttggaaggtttttcttctgaagagggtaatgtagcttgaatctctagaaccacactatgtccggcaaagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
360580 |
gcaacaacaacacctctccacattggtactttggaaggtttttcttctgaagagggtaatgtagcttgaatctctagaaccacactatgtccggcaaagg |
360679 |
T |
|
| Q |
101 |
caaacgctattgttccaagtgcattaaatacatcgaaagtcttcccaggagtagtgtgcgatcgaacaccatagtaagttggatgatgttcaattccctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
360680 |
caaacgctattgttccaagtgcattaaatacatcgaaagtcttcccaggagtagtgtgcgatcgaacaccatagtgagttggatgatgttcaattccctt |
360779 |
T |
|
| Q |
201 |
cgcaagtgaagacccaaatgccaccatcgaataactgtaaaa-catcacaagcgacatatagcttaaannnnnnngtatttctaatgaaccgatttatcg |
299 |
Q |
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||||||||| ||||||||||||||||||||||||||| |||| ||||| ||| ||| ||||||||| |||||||||| |||||||| |||| |
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| T |
360780 |
cgcaagtgacgacccaaatgccaccatcgaataactgcaaaaccatcataagagac--atagcttaattttttttgtatttctaacaaaccgattcatcg |
360877 |
T |
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| Q |
300 |
gtcagtaaggcaattaggtta |
320 |
Q |
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|||| |||||||||||||||| |
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| T |
360878 |
gtcaataaggcaattaggtta |
360898 |
T |
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