View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8903_low_55 (Length: 332)
Name: NF8903_low_55
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_55 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 17 - 320
Target Start/End: Original strand, 93496 - 93799
Alignment:
| Q |
17 |
atttgtcaattccaaatctgatccatcattattcatctatctcaaaggtgatgtcaaactctacactttggtatatgttgatgatattttaattacaggc |
116 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
93496 |
atttgtcaattcaaaatctgatccatcattattcatctatctcaaaggtgatgtcaaactctacactttggtatatgttgatgatattttaattacaggc |
93595 |
T |
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| Q |
117 |
aacaacaaccatgcaattgctaagtgcatttcaacactaggcactatgttttccatcaaagacttaggttccattcacttctttcttggtgttgaagtca |
216 |
Q |
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| T |
93596 |
aacaacaaccatgcaattgctaagtgcatttcaacactaggcactatgttttccatcaaagacttaggttccattcacttctttcttggtgttgaagtca |
93695 |
T |
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| Q |
217 |
ttcctactactcaaggattatttctgagtcaacataaatatattcatgatctacttgaccgcacaaagatgaaagatgcaaagattgtccattcaccgat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
93696 |
ttcctactactcaaggattatttctgagtcaacataaatatattcatgatctacttgaccgcacaaagatgaaagatgcaaagattgtccattcaccgat |
93795 |
T |
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| Q |
317 |
gtct |
320 |
Q |
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|||| |
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| T |
93796 |
gtct |
93799 |
T |
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Back To:
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Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 24494147 - 24494449
Alignment:
| Q |
18 |
tttgtcaattccaaatctgatccatcattattcatctatctcaaaggtgatgtcaaactctacactttggtatatgttgatgatattttaattacaggca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24494147 |
tttgtcaattccaaatctgatccatcattattcatctatctcaaaggtgatgtcaaactctacactttggtatatgttgatgatattttaattactggca |
24494246 |
T |
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| Q |
118 |
acaacaaccatgcaattgctaagtgcatttcaacactaggcactatgttttccatcaaagacttaggttccattcacttctttcttggtgttgaagtcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494247 |
acaacaaccatgcaattgctaagtgcatttcaacactaggcactatgttttccatcaaagacttaggttccattcacttctttcttggtgttgaagtcat |
24494346 |
T |
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| Q |
218 |
tcctactactcaaggattatttctgagtcaacataaatatattcatgatctacttgaccgcacaaagatgaaagatgcaaagattgtccattcaccgatg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494347 |
tcctactactcaaggattatttctgagtcaacataaatatattcatgatctacttgaccgcacaaagatgaaagatgcaaagattgtccattcaccgatg |
24494446 |
T |
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| Q |
318 |
tct |
320 |
Q |
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||| |
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| T |
24494447 |
tct |
24494449 |
T |
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