View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8903_low_60 (Length: 312)
Name: NF8903_low_60
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_60 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 12 - 312
Target Start/End: Complemental strand, 7666015 - 7665715
Alignment:
| Q |
12 |
tggacatcaaagtatctcaaggatctcatgccaatgaagaatcaggtgaagtttaaaaaattactaaaacaatagcatccaaaactatgcttttcccaat |
111 |
Q |
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| T |
7666015 |
tggacatcaaagtatctcaaggatctcatgccaatgaagaatcaggtgaagttcaaaaaattgctaaaacaatagcatccaagactatgcttttcccaat |
7665916 |
T |
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| Q |
112 |
ccctttcttctactttatataatcgttacttcctgcaacatgaacttctaataatattttcttgcagtgaataagcaattaaacgataaagagagaatcg |
211 |
Q |
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| T |
7665915 |
ccctttcttctactttatataatcgttacttcctgcaacatgaacttgtaacaatattttcttgcagtgaataagcaattaaacgataaagagagaatcg |
7665816 |
T |
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| Q |
212 |
ctgctgccttagagaatccaaacctgcgccagcttgtggatgagtgtatcgagtccaatgatctgtgaacaagcatatattatgcctgcccaataactat |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
7665815 |
ctgctgccttagagaatccaaacctgcgccagcttgtggatgagtgtctcgagtccaatgaactgtgaacaaacatatattatgcctgcccaataactat |
7665716 |
T |
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| Q |
312 |
t |
312 |
Q |
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| T |
7665715 |
t |
7665715 |
T |
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