View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8903_low_62 (Length: 311)

Name: NF8903_low_62
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8903_low_62
NF8903_low_62
[»] chr4 (9 HSPs)
chr4 (1-148)||(36090546-36090693)
chr4 (151-292)||(36090730-36090871)
chr4 (1-108)||(21482414-21482521)
chr4 (1-131)||(36107659-36107789)
chr4 (1-135)||(34971856-34971990)
chr4 (147-256)||(21482236-21482345)
chr4 (1-135)||(36100396-36100530)
chr4 (151-291)||(36100213-36100347)
chr4 (151-203)||(36107554-36107606)
[»] chr6 (2 HSPs)
chr6 (1-135)||(6838416-6838550)
chr6 (151-207)||(6838311-6838367)
[»] chr2 (2 HSPs)
chr2 (1-135)||(8338280-8338414)
chr2 (158-224)||(8338158-8338224)


Alignment Details
Target: chr4 (Bit Score: 124; Significance: 9e-64; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 36090546 - 36090693
Alignment:
Q  1 attgagatgaagcaagtcaattataacataaggcacgtcttatacatatgataaaccttcgtagtcgtgtccgccactttgaattctgatctgaatgttg 100  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| || |||||||||||| ||||||||||||||||||||    
T  36090546 attgagatgaagcaagtcaattataacataaggcatgtctgatacatttgataaaccttcgtaatcatgtccgccacttcgaattctgatctgaatgttg 36090645  T
Q  101 ttacttttagcacatttaactgttacttggacatgggaactatccttt 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36090646 ttacttttagcacatttaactgttacttggacatgggaactatccttt 36090693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 151 - 292
Target Start/End: Original strand, 36090730 - 36090871
Alignment:
Q  151 tgttttgaatctcttgttgtgtattttcatgttgaggatggttaagaatgaggtgttcttttgactgtaaatgatgtaagaaacaggggaattccaagat 250  Q
    |||||||||||||||||  |||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||| ||||||| |||||||| |||||    
T  36090730 tgttttgaatctcttgtaatgtattttcatgttgaagatggttaagaatgaggtgttgttttgagtgtaaatgatgtcagaaacatgggaattcaaagat 36090829  T
Q  251 tgagaataattagaaaaacaagtgagaaaattttgaatggga 292  Q
    |||||||||| ||||||||||||||||||||||| |||||||    
T  36090830 tgagaataatgagaaaaacaagtgagaaaattttaaatggga 36090871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 21482521 - 21482414
Alignment:
Q  1 attgagatgaagcaagtcaattataacataaggcacgtcttatacatatgataaaccttcgtagtcgtgtccgccactttgaattctgatctgaatgttg 100  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||  ||||||| ||||||||| | |||||||||||||| |||    
T  21482521 attgagatgaagcaagtcaattataacaaaaggcacgtctgatacatatgagaaaccttcaaagtcgtggccgccacttcggattctgatctgaattttg 21482422  T
Q  101 ttactttt 108  Q
    ||||||||    
T  21482421 ttactttt 21482414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 36107789 - 36107659
Alignment:
Q  1 attgagatgaagcaagtcaattataacataaggcacgtcttatacatatgataaaccttcgtagtcgtgtccgccactttgaattctgatctgaatgttg 100  Q
    ||||||||||| || ||||| ||||| | ||||||| ||| |||||||||| |||||||| |||||||| ||||||||| ||||||| ||||||||||||    
T  36107789 attgagatgaaacatgtcaagtataataaaaggcacatctgatacatatgaaaaaccttcatagtcgtgaccgccacttcgaattctaatctgaatgttg 36107690  T
Q  101 ttacttttagcacatttaactgttacttgga 131  Q
    || ||||| |||||||||| |||| ||||||    
T  36107689 ttgcttttggcacatttaattgtttcttgga 36107659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 34971856 - 34971990
Alignment:
Q  1 attgagatgaagcaagtcaattataacataaggcacgtcttatacatatgataaaccttcgtagtcgtgtccgccactttgaattctgatctgaatgttg 100  Q
    |||||| |||| || ||||| || || | ||||||| ||| ||| ||||||||||||||| ||||| || || |||||| ||||||| ||||||||||||    
T  34971856 attgaggtgaaacatgtcaagtacaataaaaggcacatctgataaatatgataaaccttcatagtcatgccctccacttcgaattcttatctgaatgttg 34971955  T
Q  101 ttacttttagcacatttaactgttacttggacatg 135  Q
    |||||||| |||||||||| |||| ||||||||||    
T  34971956 ttacttttggcacatttaattgttgcttggacatg 34971990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 147 - 256
Target Start/End: Complemental strand, 21482345 - 21482236
Alignment:
Q  147 ttgttgttttgaatctcttgttgtgtattttcatgttgaggatggttaagaatgaggtgttcttttgactgtaaatgatgtaagaaacaggggaattcca 246  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||| |||||||| | || ||| || |||||||||| | ||| | || ||||||| |    
T  21482345 ttgttgttttaaatctcttgttttgtattttcatgttgaggatggttgagaatgagatattgtttggagtgtaaatgatatcagagatagaggaattcaa 21482246  T
Q  247 agattgagaa 256  Q
    ||||||||||    
T  21482245 agattgagaa 21482236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 36100530 - 36100396
Alignment:
Q  1 attgagatgaagcaagtcaattataacataaggcacgtcttatacatatgataaaccttcgtagtcgtgtccgccactttgaattctgatctgaatgttg 100  Q
    |||||| ||||||||||||||||||||||||||||||||| |||  ||||| || ||||| || ||||| ||||||||| | ||||| |  || | ||||    
T  36100530 attgaggtgaagcaagtcaattataacataaggcacgtctgataagtatgagaagccttcataatcgtggccgccacttcggattcttaattggaagttg 36100431  T
Q  101 ttacttttagcacatttaactgttacttggacatg 135  Q
    ||  |||| |||||||||| ||||  |||||||||    
T  36100430 ttgattttggcacatttaattgttgtttggacatg 36100396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 151 - 291
Target Start/End: Complemental strand, 36100347 - 36100213
Alignment:
Q  151 tgttttgaatctcttgttgtgtattttcatgttgaggatggttaagaatgaggtgttcttttgactgtaaatgatgtaagaaacaggggaattccaagat 250  Q
    |||||| ||||||||||| ||||||||||| || ||||||||| ||||||||| ||| ||| ||| |||||| ||||      |||  |||||  |||||    
T  36100347 tgttttaaatctcttgttatgtattttcatatttaggatggttgagaatgaggggttttttggaccgtaaataatgt------cagatgaattaaaagat 36100254  T
Q  251 tgagaataattagaaaaacaagtgagaaaattttgaatggg 291  Q
    |||||||||| | |||||||| |||||| ||||||||||||    
T  36100253 tgagaataatgataaaaacaattgagaagattttgaatggg 36100213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 36107606 - 36107554
Alignment:
Q  151 tgttttgaatctcttgttgtgtattttcatgttgaggatggttaagaatgagg 203  Q
    |||||| |||||||| || |||||||||||||||||||| ||| |||||||||    
T  36107606 tgttttaaatctcttattttgtattttcatgttgaggatagttgagaatgagg 36107554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 6838550 - 6838416
Alignment:
Q  1 attgagatgaagcaagtcaattataacataaggcacgtcttatacatatgataaaccttcgtagtcgtgtccgccactttgaattctgatctgaatgttg 100  Q
    ||||||||||| || ||||| ||||||| ||||||| ||| ||||||||||  ||||||| |||||||| || |||||| ||||||| ||||||||||||    
T  6838550 attgagatgaaacatgtcaagtataacaaaaggcacatctgatacatatgaacaaccttcatagtcgtgaccaccacttcgaattctaatctgaatgttg 6838451  T
Q  101 ttacttttagcacatttaactgttacttggacatg 135  Q
    || ||||| ||||||||||||||| ||||||||||    
T  6838450 ttgcttttggcacatttaactgtttcttggacatg 6838416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 6838367 - 6838311
Alignment:
Q  151 tgttttgaatctcttgttgtgtattttcatgttgaggatggttaagaatgaggtgtt 207  Q
    |||||| |||||||| || |||||||| ||||||||||| ||| |||||||||||||    
T  6838367 tgttttaaatctcttattttgtatttttatgttgaggatagttgagaatgaggtgtt 6838311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 8338414 - 8338280
Alignment:
Q  1 attgagatgaagcaagtcaattataacataaggcacgtcttatacatatgataaaccttcgtagtcgtgtccgccactttgaattctgatctgaatgttg 100  Q
    |||||| ||||||| ||||||||||||| |||  | |||| |||| || || || |||||||||||||| ||||||||| ||||||| |||||||| |||    
T  8338414 attgaggtgaagcaggtcaattataacaaaagatatgtctgatacgtaagagaagccttcgtagtcgtggccgccacttcgaattcttatctgaatattg 8338315  T
Q  101 ttacttttagcacatttaactgttacttggacatg 135  Q
    || ||||| |||||||||| |||| ||||||||||    
T  8338314 ttgcttttggcacatttaattgttgcttggacatg 8338280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 8338224 - 8338158
Alignment:
Q  158 aatctcttgttgtgtattttcatgttgaggatggttaagaatgaggtgttcttttgactgtaaatga 224  Q
    ||||||||||| |||||||||||||| ||||||||| ||||||||||||| ||| |  |||||||||    
T  8338224 aatctcttgttatgtattttcatgtttaggatggttgagaatgaggtgttgtttggtgtgtaaatga 8338158  T

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