View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8903_low_66 (Length: 306)
Name: NF8903_low_66
Description: NF8903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8903_low_66 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 19044874 - 19045168
Alignment:
| Q |
1 |
cttgtttctcttcattttcacaaactgactagcaggcaatcaagatttcaagatctagagcaagatttattttacctattccaccaattccattgatcct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19044874 |
cttgtttctcttcattttcacaaactgactagcaggcaaccaagcattcaagatctagagcaagatttattttacctattccaccaattccattgatcct |
19044973 |
T |
|
| Q |
101 |
ggtttcaagatctgaaagtgaatctgggatgtataggattggtgtaataggtaaaacaacacttgcactagaagcaaaatatatatctggttgcactttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
19044974 |
ggtttcaagatctgaaagtgaatctgggatgtataggattggtgtaataggtaaaacaacacttgcactagaagcaaaatatatatttgtttgcactttg |
19045073 |
T |
|
| Q |
201 |
cagagggttacctttttaattttattatctctttcctgaattttcaatcttgaacttgttattattaaatttcagttttgaatttgttttgatgt |
295 |
Q |
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||||||| ||||||||||||| ||||||| ||| || ||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
19045074 |
tagagggtaacctttttaatttcattatcttttttcttaattttcaatcttgaacttattcttattaaatttcagttttgaatttgttttgatgt |
19045168 |
T |
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